ggKbase home page

SCNpilot_expt_500_p_scaffold_218_curated

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_218_curated_1
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(317..4501)
DNA (4185bp) protein (1395aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit beta' n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=RPOC_PARUW rbh
SCNpilot_expt_500_p_scaffold_218_curated_2
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(4537..8304)
DNA (3768bp) protein (1256aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Neochlamydia hartmannellae RepID=S4TKN9_9CHLA
SCNpilot_expt_500_p_scaffold_218_curated_3
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists


comp(8472..8861)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12 n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=RL7_PARUW
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_expt_500_p_scaffold_218_curated_4
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists


comp(8893..9420)
DNA (528bp) protein (176aa)
50S ribosomal protein L10 n=2 Tax=Waddlia chondrophila RepID=D6YUZ7_WADCW
50S ribosomal protein L10 {ECO:0000313|EMBL:CDZ80303.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_expt_500_p_scaffold_218_curated_5
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists


comp(9431..10129)
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=RL1_PARUW rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
SCNpilot_expt_500_p_scaffold_218_curated_6
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists


comp(10141..10566)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=RL11_PARUW
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_expt_500_p_scaffold_218_curated_7
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(10656..11204)
DNA (549bp) protein (183aa)
Transcription termination/antitermination protein NusG n=2 Tax=Parachlamydia acanthamoebae RepID=F8L117_PARAV
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
nusG; transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG
SCNpilot_expt_500_p_scaffold_218_curated_8
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(11243..11533)
DNA (291bp) protein (97aa)
Protein translocase subunit SecE n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MDM8_PARUW
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
secE; preprotein translocase SecE; K03073 preprotein translocase subunit SecE
SCNpilot_expt_500_p_scaffold_218_curated_9
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(11705..12889)
DNA (1185bp) protein (395aa)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu rbh
Elongation factor Tu n=1 Tax=Protochlamydia naegleriophila RepID=S4TL49_9CHLA
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_218_curated_10
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(13278..13496)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=2 Tax=Candidatus Protochlamydia amoebophila RepID=IF1_PARUW
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
SCNpilot_expt_500_p_scaffold_218_curated_11
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(13605..14387)
DNA (783bp) protein (261aa)
PF06966 family protein n=1 Tax=Leptospira fainei serovar Hurstbridge str. BUT 6 RepID=S3UT47_9LEPT
Putative membrane protein {ECO:0000313|EMBL:CDZ80296.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_12
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

14578..15033
DNA (456bp) protein (152aa)
Uncharacterized sufE-like protein slr1419 n=2 Tax=Parachlamydia acanthamoebae RepID=F8KWR3_PARAV
Putative SufE-like protein YgdK {ECO:0000313|EMBL:CDZ80295.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
sufE-like protein slr1419; K02426 cysteine desulfuration protein SufE
SCNpilot_expt_500_p_scaffold_218_curated_13
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(15051..16193)
DNA (1143bp) protein (381aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQL0_9BACT
NADPH dehydrogenase {ECO:0000313|EMBL:CDZ80294.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
namA; NADPH dehydrogenase
SCNpilot_expt_500_p_scaffold_218_curated_14
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

16550..17959
DNA (1410bp) protein (470aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80293.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_218_curated_15
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

18038..19327
DNA (1290bp) protein (430aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80292.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_218_curated_16
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

19334..20635
DNA (1302bp) protein (434aa)
Uncharacterized protein {ECO:0000313|EMBL:CDZ80291.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
SCNpilot_expt_500_p_scaffold_218_curated_17
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(20752..22539)
DNA (1788bp) protein (596aa)
Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7F6_9CHLA
Heat shock protein 70 {ECO:0000313|EMBL:CDZ80290.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_18
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(22547..23041)
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MDN5_PARUW
Uncharacterized protein {ECO:0000313|EMBL:CDZ80289.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_19
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(23097..24398)
DNA (1302bp) protein (434aa)
Tyrosine-specific transport protein n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8L0D7_PARAV
Tyrosine permease {ECO:0000313|EMBL:CDZ80288.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
tyrP-D; tyrosine-specific transport protein
SCNpilot_expt_500_p_scaffold_218_curated_20
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(24515..26233)
DNA (1719bp) protein (573aa)
Uncharacterized protein n=2 Tax=Parachlamydia acanthamoebae RepID=F8L193_PARAV
HEAT repeat {ECO:0000313|EMBL:CDZ80287.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_21
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(26247..26813)
DNA (567bp) protein (189aa)
Isochorismatase domain-containing protein 1 n=2 Tax=Parachlamydia acanthamoebae RepID=F8KXG6_PARAV
Isochorismatase family protein {ECO:0000313|EMBL:CDZ80286.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
isoc1; isochorismatase domain-containing protein 1
SCNpilot_expt_500_p_scaffold_218_curated_22
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(26810..27145)
DNA (336bp) protein (112aa)
HIT-like protein CPn_0488/CP_0266/CPj0488/CpB0508 n=2 Tax=Parachlamydia acanthamoebae RepID=F8L194_PARAV
HIT-like protein {ECO:0000313|EMBL:CDZ80285.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
HIT-like protein
SCNpilot_expt_500_p_scaffold_218_curated_23
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(27142..28038)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MDP3_PARUW
Uncharacterized protein {ECO:0000313|EMBL:CDZ80284.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_218_curated_24
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

28626..30752
DNA (2127bp) protein (709aa)
Putative uncharacterized protein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MDP4_PARUW
Uncharacterized protein {ECO:0000313|EMBL:CDZ80283.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein; K06966 rbh
SCNpilot_expt_500_p_scaffold_218_curated_25
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(30779..31612)
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RA39_9CHLA
Uncharacterized protein {ECO:0000313|EMBL:CDZ80282.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_26
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(31615..32694)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=2 Tax=Parachlamydia acanthamoebae RepID=F8L197_PARAV
Uncharacterized protein {ECO:0000313|EMBL:CDZ80281.1}; Flags: Precursor;; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_27
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

33159..34238
DNA (1080bp) protein (360aa)
Uncharacterized protein n=2 Tax=Parachlamydia acanthamoebae RepID=F8L1K2_PARAV
Putative prophage phiRv2 integrase {ECO:0000313|EMBL:CDZ80277.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_28
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

34225..35682
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8KZV1_PARAV
Uncharacterized protein {ECO:0000313|EMBL:CDZ80276.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_29
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

35879..36088
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae (strain UV7) RepID=F8L1J8_PARAV
Uncharacterized protein {ECO:0000313|EMBL:CDZ80275.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_218_curated_30
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

36156..38492
DNA (2337bp) protein (779aa)
Uncharacterized protein n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L8J1_SIMNZ
Uncharacterized protein {ECO:0000313|EMBL:CDZ80274.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
Displaying items 1-30 of 91 in total

View Taxonomy