ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1202_curated

Search features with annotation key words

Displaying items 1-30 of 203 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1202_curated_1
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..159
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KCV1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL17877.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
SCNpilot_expt_1000_bf_scaffold_1202_curated_2
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(129..644)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002EE2E0F
Uncharacterized protein {ECO:0000313|EMBL:KJL28127.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1202_curated_3
Gordonia aichiensis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(654..1427)
DNA (774bp) protein (258aa)
Putative UvrABC system protein A n=1 Tax=Gordonia aichiensis NBRC 108223 RepID=L7KJG7_9ACTO
Putative UvrABC system protein A {ECO:0000313|EMBL:GAC47858.1}; TaxID=1220583 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia aichiensis NBRC 108223.;"
excinuclease ABC subunit A
SCNpilot_expt_1000_bf_scaffold_1202_curated_4
Corynebacterium ammoniagenes, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1394..2143)
DNA (750bp) protein (250aa)
Putative excinuclease ABC, A subunit n=1 Tax=Corynebacterium ammoniagenes DSM 20306 RepID=D5NZT0_CORAM
Putative excinuclease ABC, A subunit {ECO:0000313|EMBL:EFG80752.1}; TaxID=649754 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium ammoniagenes DSM 20306.;"
uvrA3; UvrABC system protein A; K03701 excinuclease ABC subunit A
SCNpilot_expt_1000_bf_scaffold_1202_curated_5
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2177..2734)
DNA (558bp) protein (186aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
methionine sulfoxide reductase A n=1 Tax=Microbacterium barkeri RepID=UPI000308D9DB
Peptide methionine sulfoxide reductase A
SCNpilot_expt_1000_bf_scaffold_1202_curated_6
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2868..3341
DNA (474bp) protein (158aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI000348DF1B
alkylhydroperoxidase AhpD family core domain protein
SCNpilot_expt_1000_bf_scaffold_1202_curated_7
Arthrobacter siccitolerans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3338..3700
DNA (363bp) protein (121aa)
GNAT-family acetyltransferase {ECO:0000313|EMBL:CCQ44427.1}; EC=2.3.-.- {ECO:0000313|EMBL:CCQ44427.1};; TaxID=861266 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter siccitolerans.;"
GNAT family acetyltransferase (EC:2.3.-.-); K06975
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI00037545A2
SCNpilot_expt_1000_bf_scaffold_1202_curated_8
Gordonia araii, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3726..4721)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI0003789CA9
Putative uncharacterized protein {ECO:0000313|EMBL:GAB09460.1}; TaxID=1073574 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia araii NBRC 100433.;"
Pirin-related protein; K06911
SCNpilot_expt_1000_bf_scaffold_1202_curated_9
Janibacter hoylei, Janibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4795..5262)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Janibacter hoylei PVAS-1 RepID=K1E042_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EKA62210.1}; TaxID=1210046 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter hoylei PVAS-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1202_curated_10
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5360..5632
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F2CDF2
Uncharacterized protein {ECO:0000313|EMBL:EYT56060.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
SCNpilot_expt_1000_bf_scaffold_1202_curated_11
Bifidobacterium subtile, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5655..6203)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Arthrobacter sp. PAO19 RepID=UPI0003B37F96
Uncharacterized protein {ECO:0000313|EMBL:KFJ03863.1}; TaxID=77635 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium subtile.;"
hypothetical protein; K09975 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1202_curated_12
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6212..6709)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Gordonia kroppenstedtii RepID=UPI00037B6059
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:CCK30014.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
SCNpilot_expt_1000_bf_scaffold_1202_curated_13
Knoellia flava, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6794..7291
DNA (498bp) protein (166aa)
Cupin domain-containing protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GLF4_9BACT
Cupin {ECO:0000313|EMBL:KGN29293.1}; TaxID=1385518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia flava TL1.;"
mannose-6-phosphate isomerase
SCNpilot_expt_1000_bf_scaffold_1202_curated_14
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7288..7722
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4N8F1_KITSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ27482.1}; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
SCNpilot_expt_1000_bf_scaffold_1202_curated_15
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7727..8464
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000378F738
Glycoside hydrolase family 25 {ECO:0000313|EMBL:EWS80716.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
glycoside hydrolase family 25; K07273 lysozyme
SCNpilot_expt_1000_bf_scaffold_1202_curated_16
Streptomyces venezuelae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8499..9044
DNA (546bp) protein (182aa)
Lysine decarboxylase (EC:4.1.1.18)
Lysine decarboxylase {ECO:0000313|EMBL:CCA58447.1}; EC=4.1.1.18 {ECO:0000313|EMBL:CCA58447.1};; TaxID=953739 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 /; JCM 4526 / NBRC 13096 / PD 04745).;"
lysine decarboxylase n=1 Tax=Streptomyces violaceoniger RepID=UPI0003C75C91
SCNpilot_expt_1000_bf_scaffold_1202_curated_17
Gordonia araii, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9405..9947
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Gordonia araii NBRC 100433 RepID=G7H7D2_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB11757.1}; TaxID=1073574 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia araii NBRC 100433.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1202_curated_18
Gordonia araii, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9944..10768
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=1 Tax=Gordonia araii NBRC 100433 RepID=G7H7D1_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB11756.1}; TaxID=1073574 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia araii NBRC 100433.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1202_curated_19
unknown

Not on your lists

comp(10835..11023)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1202_curated_20
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11167..12612
DNA (1446bp) protein (482aa)
Plasmid pRiA4b ORF-3 family protein n=1 Tax=Rhodococcus opacus M213 RepID=K8XEB6_RHOOP
plasmid pRiA4b ORF-3 family protein
Plasmid pRiA4b ORF-3 family protein {ECO:0000313|EMBL:EKT79739.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
SCNpilot_expt_1000_bf_scaffold_1202_curated_21
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12658..13029)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B3C7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD83049.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
SCNpilot_expt_1000_bf_scaffold_1202_curated_22
unknown

Not on your lists

13646..13870
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1202_curated_23
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14714..15565)
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=Gordonia polyisoprenivorans NBRC 16320 RepID=H0R771_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KJL17368.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1202_curated_24
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15753..17474)
DNA (1722bp) protein (574aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
gltX; glutamyl- and glutaminyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
Glutamate--tRNA ligase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDN7_9MICO
SCNpilot_expt_1000_bf_scaffold_1202_curated_25
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17519..18808)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C243C
Contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88168.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
permease of the major facilitator superfamily
SCNpilot_expt_1000_bf_scaffold_1202_curated_26
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18805..19581)
DNA (777bp) protein (259aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=1 Tax=Microbacterium barkeri RepID=UPI00030AE647
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase {ECO:0000313|EMBL:KDA05763.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
SCNpilot_expt_1000_bf_scaffold_1202_curated_27
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19608..20696)
DNA (1089bp) protein (363aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KDA05764.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KDA05764.1};; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
ilvE; branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
branched-chain amino acid aminotransferase n=1 Tax=Microbacterium barkeri RepID=UPI00030657FA
SCNpilot_expt_1000_bf_scaffold_1202_curated_28
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20743..21792)
DNA (1050bp) protein (350aa)
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:KJL30724.1}; EC=1.1.1.85 {ECO:0000313|EMBL:KJL30724.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
leuB; isocitrate/isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00038254D7
SCNpilot_expt_1000_bf_scaffold_1202_curated_29
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21911..23455)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFN1_9MICO
Contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88171.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
permease of the major facilitator superfamily; K08167 MFS transporter, DHA2 family, methyl viologen resistance protein SmvA
SCNpilot_expt_1000_bf_scaffold_1202_curated_30
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23556..24116
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KHS4_9MICO
Bacterial regulatory protein, tetR family {ECO:0000313|EMBL:KJL17885.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
transcriptional regulator
Displaying items 1-30 of 203 in total

View Taxonomy