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SCNpilot_cont_300_bf_scaffold_1318_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1318_curated_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20..1969)
DNA (1950bp) protein (650aa)
ABC transporter ATPase (EC:3.6.3.25); K05685 macrolide transport system ATP-binding/permease protein [EC:3.6.3.-]
Macrolide export ATP-binding/permease protein MacB {ECO:0000255|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000255|HAMAP-Rule:MF_01720};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Macrolide export ATP-binding/permease protein MacB n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=MACB_NITWN rbh
SCNpilot_cont_300_bf_scaffold_1318_curated_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1966..2115)
DNA (150bp) protein (50aa)
Secretion protein HlyD n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQZ0_NITWN
secretion protein HlyD; K13888 macrolide-specific efflux protein MacA
Secretion protein HlyD {ECO:0000313|EMBL:ABA05301.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1318_curated_3
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2129..2458)
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQY9_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05302.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1318_curated_4
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2455..2982)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X074_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34365.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1318_curated_5
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2982..4166)
DNA (1185bp) protein (395aa)
PepSY-associated membrane protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X073_9BRAD
PepSY-associated membrane protein {ECO:0000313|EMBL:EAQ34364.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
propeptide PepSY amd peptidase M4
SCNpilot_cont_300_bf_scaffold_1318_curated_6
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4346..6457)
DNA (2112bp) protein (704aa)
TonB-denpendent receptor n=1 Tax=Pseudomonas psychrophila RepID=UPI0002FE1AA0
TonB-denpendent receptor {ECO:0000313|EMBL:ERH56793.1}; TaxID=1390371 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens EGD-AQ6.;"
ferric alcaligin siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_1318_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6958..7872)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036014BE
Uncharacterized protein {ECO:0000313|EMBL:KDP73371.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
FecR protein; K07165 transmembrane sensor
SCNpilot_cont_300_bf_scaffold_1318_curated_8
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8029..8544)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000367BAA5
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABL71062.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_300_bf_scaffold_1318_curated_9
unknown

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8579..8800
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1318_curated_10
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8879..11371)
DNA (2493bp) protein (831aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X080_9BRAD
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EAQ34362.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_1318_curated_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11503..12486)
DNA (984bp) protein (328aa)
Anti-FecI sigma factor, FecR n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QU68_METTR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:EUB98242.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
SCNpilot_cont_300_bf_scaffold_1318_curated_12
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12587..13102)
DNA (516bp) protein (172aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QU69_METTR
Fec I like protein {ECO:0000313|EMBL:EKF18328.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
fec I like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_1318_curated_13
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13537..14028)
DNA (492bp) protein (164aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSZ2_NITWN
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ABA04599.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Displaying 13 items

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