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SCNpilot_cont_300_bf_scaffold_1902_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1902_curated_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..942)
DNA (942bp) protein (314aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044};; Non-discriminating aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=ND-AspRS {ECO:0000255|HAMAP-Rule:MF_00044};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb
Aspartate--tRNA ligase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=SYD_NITWN rbh
SCNpilot_cont_300_bf_scaffold_1902_curated_2
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1121..2311
DNA (1191bp) protein (397aa)
ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5]
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
Ribonuclease D n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1L0_9BRAD
SCNpilot_cont_300_bf_scaffold_1902_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2322..2984)
DNA (663bp) protein (221aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLI7_NITHX
SCNpilot_cont_300_bf_scaffold_1902_curated_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3132..4640)
DNA (1509bp) protein (503aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Ppx/GppA phosphatase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLI6_NITHX
Ppx/GppA phosphatase {ECO:0000313|EMBL:ABE62911.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_5
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4648..6849)
DNA (2202bp) protein (734aa)
Polyphosphate kinase {ECO:0000255|HAMAP-Rule:MF_00347}; EC=2.7.4.1 {ECO:0000255|HAMAP-Rule:MF_00347};; ATP-polyphosphate phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000255|HAMAP-Rule:MF_00347}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1]
Polyphosphate kinase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=PPK_NITWN rbh
SCNpilot_cont_300_bf_scaffold_1902_curated_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7008..7436)
DNA (429bp) protein (143aa)
Regulatory inactivation of DnaA Hda protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLI4_NITHX
hypothetical protein
Regulatory inactivation of DnaA Hda protein {ECO:0000313|EMBL:ABE62913.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_7
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7699..8241)
DNA (543bp) protein (181aa)
CDP-alcohol phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-alcohol phosphatidyltransferase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1K5_9BRAD
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:EAQ33884.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_300_bf_scaffold_1902_curated_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8414..9487
DNA (1074bp) protein (358aa)
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000255|HAMAP-Rule:MF_00741}; EC=6.3.3.1 {ECO:0000255|HAMAP-Rule:MF_00741};; AIR synthase {ECO:0000255|HAMAP-Rule:MF_00741}; AIRS {ECO:0000255|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000255|HAMAP-Rule:MF_00741}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=PUR5_NITHX rbh
SCNpilot_cont_300_bf_scaffold_1902_curated_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9511..10164
DNA (654bp) protein (218aa)
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SS82_NITWN
SCNpilot_cont_300_bf_scaffold_1902_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10257..10460)
DNA (204bp) protein (68aa)
Cold-shock DNA-binding domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VDN1_RHOPX
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:ADU43965.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10822..11652)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62918.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11675..12097)
DNA (423bp) protein (141aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ndk; nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1K1_9BRAD
SCNpilot_cont_300_bf_scaffold_1902_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12233..13885)
DNA (1653bp) protein (551aa)
carbamoyl-phosphate synthase subunit L; K01968 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
Carbamoyl-phosphate synthase L chain, ATP-binding protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH6_NITHX
Carbamoyl-phosphate synthase L chain, ATP-binding protein {ECO:0000313|EMBL:ABE62921.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_14
unknown

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14031..14312
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1902_curated_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14180..15784)
DNA (1605bp) protein (535aa)
propionyl-CoA carboxylase (EC:6.4.1.3); K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
Propionyl-CoA carboxylase {ECO:0000313|EMBL:ABE62922.1}; EC=6.4.1.3 {ECO:0000313|EMBL:ABE62922.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Propionyl-CoA carboxylase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH5_NITHX
SCNpilot_cont_300_bf_scaffold_1902_curated_16
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16005..16310)
DNA (306bp) protein (102aa)
ETC complex I subunit conserved region protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1J6_9BRAD
ETC complex I subunit conserved region protein {ECO:0000313|EMBL:EAQ33892.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ETC complex I subunit region
SCNpilot_cont_300_bf_scaffold_1902_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16441..18300)
DNA (1860bp) protein (620aa)
carbamoyltransferase; K00612 carbamoyltransferase [EC:2.1.3.-]
Carbamoyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH3_NITHX
Carbamoyltransferase {ECO:0000313|EMBL:ABE62924.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18748..19044
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLH2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62925.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_19
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19420..19680)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X0E6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34288.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1902_curated_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20254..20559)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLG6_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62931.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_21
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21026..21361
DNA (336bp) protein (112aa)
Uncharacterized protein {ECO:0000313|EMBL:BAR62023.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_300_bf_scaffold_1902_curated_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21789..22346)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLG0_NITHX
hypothetical protein; K09005 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62937.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22461..23069)
DNA (609bp) protein (203aa)
Cold-shock DNA-binding protein family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF9_NITHX
cold-shock DNA-binding domain-containing protein
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABE62938.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23836..24207)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62940.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_25
unknown

Not on your lists

comp(24409..24618)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F1241B
SCNpilot_cont_300_bf_scaffold_1902_curated_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24815..25264
DNA (450bp) protein (150aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLF6_NITHX
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABE62941.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1902_curated_27
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25539..25787)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X212_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ33725.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
Displaying 27 items

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