ggKbase home page

SCNpilot_cont_1000_bf_scaffold_361_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_361_curated_1
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

237..1880
DNA (1644bp) protein (548aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000345AFC1
Phospholipase {ECO:0000313|EMBL:AKC68682.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
phospholipase D/transphosphatidylase
SCNpilot_cont_1000_bf_scaffold_361_curated_2
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2187..3647)
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000349F8B0
Cytosine deaminase {ECO:0000313|EMBL:AHB07945.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_361_curated_3
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3676..4776)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034DB163
Porin {ECO:0000313|EMBL:AHB07946.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
porin
SCNpilot_cont_1000_bf_scaffold_361_curated_4
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5187..6128
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A044F
Uncharacterized protein {ECO:0000313|EMBL:KHQ95765.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
LysR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_361_curated_5
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6344..7351
DNA (1008bp) protein (336aa)
paaA; phenylacetate-CoA oxygenase subunit PaaA; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
phenylacetate-CoA oxygenase subunit PaaA n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A9EB5
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:AJC15285.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
SCNpilot_cont_1000_bf_scaffold_361_curated_6
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7404..7700
DNA (297bp) protein (99aa)
phenylacetate-CoA oxygenase subunit PaaB n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347CF8C
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:AJC20302.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
paaB; phenylacetate-CoA oxygenase subunit paab; K02610 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
SCNpilot_cont_1000_bf_scaffold_361_curated_7
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7750..8553
DNA (804bp) protein (268aa)
paaC; Phenylacetic acid degradation protein paaC; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034AA897
Phenylacetic acid degradation protein {ECO:0000313|EMBL:AJE98076.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
SCNpilot_cont_1000_bf_scaffold_361_curated_8
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8576..9208
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00035D5E64
Phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:EON12615.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
paaJ; phenylacetate-CoA oxygenase, PaaJ subunit; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
SCNpilot_cont_1000_bf_scaffold_361_curated_9
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9294..10382
DNA (1089bp) protein (363aa)
phenylacetic acid degradation protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003456484
Phenylacetic acid degradation protein {ECO:0000313|EMBL:AJE98077.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
phenylacetate-CoA oxygenase/reductase PaaK subunit
SCNpilot_cont_1000_bf_scaffold_361_curated_10
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10523..11395
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003448DE6
Uncharacterized protein {ECO:0000313|EMBL:AJE98078.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_361_curated_11
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11405..12061
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000349A9E0
TetR family transcriptional regulator {ECO:0000313|EMBL:EON12618.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
regulatory protein TetR
SCNpilot_cont_1000_bf_scaffold_361_curated_12
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12303..12959
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000349B476
GCN5 family acetyltransferase {ECO:0000313|EMBL:AJE98080.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
N-acetyltransferase GCN5
SCNpilot_cont_1000_bf_scaffold_361_curated_13
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13046..13534)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347EA72
AsnC family transcriptional regulator {ECO:0000313|EMBL:AJE98081.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
Transcriptional regulator, AsnC family protein; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
SCNpilot_cont_1000_bf_scaffold_361_curated_14
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13736..13975)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000344D42F
Uncharacterized protein {ECO:0000313|EMBL:AJE98082.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
SCNpilot_cont_1000_bf_scaffold_361_curated_15
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14572..18138
DNA (3567bp) protein (1189aa)
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:AJE98083.1}; EC=1.2.7.8 {ECO:0000313|EMBL:AJE98083.1};; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
MFS transporter n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D75E0
SCNpilot_cont_1000_bf_scaffold_361_curated_16
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18284..20563)
DNA (2280bp) protein (760aa)
Malic enzyme {ECO:0000313|EMBL:AJC15295.1}; EC=1.1.1.40 {ECO:0000313|EMBL:AJC15295.1};; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
malic enzyme (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
malic enzyme n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034C4156
SCNpilot_cont_1000_bf_scaffold_361_curated_17
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20879..22117)
DNA (1239bp) protein (413aa)
Major facilitator superfamily permease n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WZG6_9BURK
MFS transporter {ECO:0000313|EMBL:AJF00823.2}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
major facilitator transporter
SCNpilot_cont_1000_bf_scaffold_361_curated_18
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22474..23163
DNA (690bp) protein (230aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
orotate phosphoribosyltransferase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D3EC8
SCNpilot_cont_1000_bf_scaffold_361_curated_19
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23267..23665
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A2530
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
camphor resistance protein CrcB; K06199 CrcB protein
SCNpilot_cont_1000_bf_scaffold_361_curated_20
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23675..24511)
DNA (837bp) protein (279aa)
XRE family transcriptional regulator n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WZD6_9BURK
DNA-binding protein {ECO:0000313|EMBL:AJE98087.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
XRE family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_361_curated_21
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24644..25483
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034B57C9
SAM-dependent methyltransferase {ECO:0000313|EMBL:AJE98088.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
ubiE/COQ5 methyltransferase family protein rbh
SCNpilot_cont_1000_bf_scaffold_361_curated_22
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25553..27049)
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A33B3
Uncharacterized protein {ECO:0000313|EMBL:AJE98089.2}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_361_curated_23
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27063..27869)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034703B2
Uncharacterized protein {ECO:0000313|EMBL:AJC20316.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
fatty acid desaturase family protein
SCNpilot_cont_1000_bf_scaffold_361_curated_24
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27912..28481)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000346FB55
Uncharacterized protein {ECO:0000313|EMBL:KHQ95926.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
A-factor biosynthesis repeat-containing protein
SCNpilot_cont_1000_bf_scaffold_361_curated_25
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28565..29950)
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003466BFA
Amine oxidase {ECO:0000313|EMBL:EON11735.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
amine oxidase
SCNpilot_cont_1000_bf_scaffold_361_curated_26
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30362..31123)
DNA (762bp) protein (254aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000344D4BC
SCNpilot_cont_1000_bf_scaffold_361_curated_27
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31295..32248)
DNA (954bp) protein (318aa)
sodium transporter n=1 Tax=Pandoraea sp. B-6 RepID=UPI000348F805
Sodium transporter {ECO:0000313|EMBL:AHB08155.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
BASS family Na(+)/bile acid symporter; K03453 bile acid:Na+ symporter, BASS family
SCNpilot_cont_1000_bf_scaffold_361_curated_28
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32401..34050)
DNA (1650bp) protein (550aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
ATP-dependent RNA helicase RhlE n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WWZ3_9BURK
SCNpilot_cont_1000_bf_scaffold_361_curated_29
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34202..35332
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347873E
LysR family transcriptional regulator {ECO:0000313|EMBL:KHQ94906.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
RSp1267; transcription regulator protein rbh
SCNpilot_cont_1000_bf_scaffold_361_curated_30
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35423..36730)
DNA (1308bp) protein (436aa)
pyrimidine permease n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347B06D
Uracil transporter {ECO:0000313|EMBL:AJP59093.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
uracil-xanthine permease
Displaying items 1-30 of 46 in total

View Taxonomy