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SCNpilot_cont_1000_bf_scaffold_406_curated

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_406_curated_1
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

190..1200
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034C8211
Serine/threonine protein kinase {ECO:0000313|EMBL:AKC71724.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
serine/threonine protein kinase
SCNpilot_cont_1000_bf_scaffold_406_curated_2
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1307..1765)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00037B1C9A
Uncharacterized protein {ECO:0000313|EMBL:AKC71725.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
hydrolase; K07038 inner membrane protein
SCNpilot_cont_1000_bf_scaffold_406_curated_3
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2105..2833
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003493A83
Uncharacterized protein {ECO:0000313|EMBL:AJE97310.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_406_curated_trna_1
unknown

Not on your lists

2987..3060
DNA (74bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_406_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3221..4033
DNA (813bp) protein (271aa)
SAM-dependent methyltransferase PhcB n=1 Tax=Pandoraea sp. B-6 RepID=UPI000348EF81
putative methyltransferase, type 11
Methyltransferase type 11 {ECO:0000313|EMBL:ACS22822.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_1000_bf_scaffold_406_curated_5
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4115..5095)
DNA (981bp) protein (327aa)
MarR family transcriptional regulator n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003452A0A
MarR family transcriptional regulator {ECO:0000313|EMBL:AJE97316.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
MarR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_406_curated_6
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5232..5567)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003651C76
Uncharacterized protein {ECO:0000313|EMBL:AJP58389.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_406_curated_7
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5864..6205
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00037D961A
Alkylphosphonate utilization protein {ECO:0000313|EMBL:AJE97318.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
phnA; Alkylphosphonate utilization operon protein PhnA
SCNpilot_cont_1000_bf_scaffold_406_curated_8
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6229..7407)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034C3BE3
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHB04925.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
nitrate ABC transporter substrate-binding protein; K15576 nitrate/nitrite transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_406_curated_9
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7417..7992)
DNA (576bp) protein (192aa)
histidine kinase n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003652784
Histidine kinase {ECO:0000313|EMBL:AKC72705.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
response regulator receiver/ANTAR domain-containing protein; K07183 response regulator NasT
SCNpilot_cont_1000_bf_scaffold_406_curated_10
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8241..9044)
DNA (804bp) protein (268aa)
cobA-2; uroporphyrin-III C-methyltransferase (EC:2.1.1.107); K02303 uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034AD604
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:EON12332.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_11
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9135..11852)
DNA (2718bp) protein (906aa)
nitrate reductase; K00372 nitrate reductase catalytic subunit [EC:1.7.99.4] rbh
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A1E67
Nitrate reductase {ECO:0000313|EMBL:EON12333.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_12
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11900..12265)
DNA (366bp) protein (122aa)
NAD(P)H-dependent nitrite reductase, small subunit; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4]
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034DAF65
Nitrite reductase {ECO:0000313|EMBL:AJE97323.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_13
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12276..14735)
DNA (2460bp) protein (820aa)
nitrite reductase (NAD(P)H), large subunit; K00362 nitrite reductase (NAD(P)H) large subunit [EC:1.7.1.4]
nitrite reductase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034DBFF7
Nitrite reductase (NAD(P)H), large subunit {ECO:0000313|EMBL:EON12335.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_14
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15114..16283)
DNA (1170bp) protein (390aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1); K06446 acyl-CoA dehydrogenase [EC:1.3.99.-]
acyl-CoA dehydrogenase n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003481B51
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EON12336.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_15
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16326..17969)
DNA (1644bp) protein (548aa)
cyclohexanecarboxylate-CoA ligase; K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347C7A6
Cyclohexanecarboxylate--CoA ligase {ECO:0000313|EMBL:AIU26511.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_16
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18017..19171)
DNA (1155bp) protein (385aa)
Acyl-CoA dehydrogenase (EC:1.3.99.3); K04117 cyclohexanecarboxyl-CoA dehydrogenase [EC:1.3.99.-]
acyl-CoA dehydrogenase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D5258
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AIU26512.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_17
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19186..19968)
DNA (783bp) protein (261aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
menB; naphthoate synthase (EC:4.1.3.36); K07536 2-ketocyclohexanecarboxyl-CoA hydrolase [EC:3.1.2.-]
dihydroxynaphthoic acid synthetase n=1 Tax=Pandoraea sp. B-6 RepID=UPI000344EE84
SCNpilot_cont_1000_bf_scaffold_406_curated_18
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20077..20844)
DNA (768bp) protein (256aa)
Short chain CoA dehydrogenase (EC:1.1.1.-); K07535 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A1737
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase {ECO:0000313|EMBL:AIU26514.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_19
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20989..21540
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034527B7
Transcriptional regulator {ECO:0000313|EMBL:AJE97331.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
MarR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_406_curated_20
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21721..22194
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003461B77
MarR family transcriptional regulator {ECO:0000313|EMBL:AIU26515.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
slyA; MarR family transcriptional regulator, involved in virulence; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
SCNpilot_cont_1000_bf_scaffold_406_curated_21
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22198..24207
DNA (2010bp) protein (670aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347F44E
Transporter {ECO:0000313|EMBL:KHQ93432.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
inner membrane efflux transporter
SCNpilot_cont_1000_bf_scaffold_406_curated_22
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24204..24413
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000346789E
Membrane protein {ECO:0000313|EMBL:AJC18149.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_406_curated_23
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24410..25375
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000345CBD9
Membrane protein {ECO:0000313|EMBL:AJE97335.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
secretion protein HlyD family
SCNpilot_cont_1000_bf_scaffold_406_curated_24
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25372..26904
DNA (1533bp) protein (511aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000362F6B9
RND transporter {ECO:0000313|EMBL:KHQ92693.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
NodT family RND efflux system outer membrane lipoprotein
SCNpilot_cont_1000_bf_scaffold_406_curated_25
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27117..27377)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D0309
Uncharacterized protein {ECO:0000313|EMBL:KHQ93428.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
SCNpilot_cont_1000_bf_scaffold_406_curated_26
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27647..28414)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034B1062
Uncharacterized protein {ECO:0000313|EMBL:AJE97338.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
LuxR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_406_curated_27
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28563..29456)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D8BCE
LysR family transcriptional regulator {ECO:0000313|EMBL:KHQ92690.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_1000_bf_scaffold_406_curated_28
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29567..31027)
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034CFE71
Multidrug transporter {ECO:0000313|EMBL:KHQ92687.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
outer membrane protein OprM 1
SCNpilot_cont_1000_bf_scaffold_406_curated_29
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31024..34161)
DNA (3138bp) protein (1046aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003481DDB
Multidrug efflux protein {ECO:0000313|EMBL:EON12352.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
multidrug efflux protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Displaying items 1-30 of 50 in total

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