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SCNpilot_cont_300_bf_scaffold_87_curated

Search features with annotation key words

Displaying items 91-120 of 1758 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_87_curated_91
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95370..96662)
DNA (1293bp) protein (431aa)
General substrate transporter n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q213Z7_RHOPB
general substrate transporter
General substrate transporter {ECO:0000313|EMBL:ABD88289.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_87_curated_92
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97234..97593)
DNA (360bp) protein (120aa)
transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003648AB0
Uncharacterized protein {ECO:0000313|EMBL:EJZ18920.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_93
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

97723..98112
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DLJ6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK83817.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_94
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98154..98894
DNA (741bp) protein (247aa)
short-chain dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI000368783D
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KEA03996.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
3-oxoacyl-ACP reductase
SCNpilot_cont_300_bf_scaffold_87_curated_95
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98909..99313
DNA (405bp) protein (135aa)
MAPEG family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XKM7_VARPD
MAPEG family protein
MAPEG family protein {ECO:0000313|EMBL:AGU53133.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_87_curated_96
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99381..101237)
DNA (1857bp) protein (619aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YRE9_9PROT
SCNpilot_cont_300_bf_scaffold_87_curated_97
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101371..102276
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PNM4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42404.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_87_curated_98
unknown

Not on your lists

102495..102725
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_87_curated_99
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102878..103840
DNA (963bp) protein (321aa)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036D1985
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS17450.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_87_curated_100
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103847..104437)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G794_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_cont_300_bf_scaffold_87_curated_101
unknown

Not on your lists

comp(104519..104716)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_87_curated_102
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105016..106305)
DNA (1290bp) protein (430aa)
Adenine permease n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U1ZFX4_9PSED
Xanthine/uracil permease family protein {ECO:0000313|EMBL:BAP81222.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT-1.;"
xanthine/uracil/vitamin C permease
SCNpilot_cont_300_bf_scaffold_87_curated_103
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106515..107117
DNA (603bp) protein (201aa)
Lipid A 3-O-deacylase (PagL) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPU2_9RHIZ
Lipid A 3-O-deacylase (PagL) {ECO:0000313|EMBL:EIM25984.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_104
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107199..107693)
DNA (495bp) protein (165aa)
NUDIX hydrolase; K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
RNA pyrophosphohydrolase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKV8_BEII9
SCNpilot_cont_300_bf_scaffold_87_curated_105
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107715..108962)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0003058BD0
Uncharacterized protein {ECO:0000313|EMBL:KFC73106.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K09798 hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_106
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109131..110597)
DNA (1467bp) protein (489aa)
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
Carboxyl-terminal protease {ECO:0000313|EMBL:ACK49615.1}; EC=3.4.21.102 {ECO:0000313|EMBL:ACK49615.1};; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Carboxyl-terminal protease n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ENA2_METSB
SCNpilot_cont_300_bf_scaffold_87_curated_107
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110597..111991)
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036EC873
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ACK49616.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_87_curated_108
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112126..112608)
DNA (483bp) protein (161aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
rRNA large subunit methyltransferase; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036FDC21
SCNpilot_cont_300_bf_scaffold_87_curated_109
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112854..113189)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000382EE8C
Iojap-like protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_87_curated_110
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113486..114166)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000380FF8F
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABG64305.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_300_bf_scaffold_87_curated_111
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114374..115264
DNA (891bp) protein (297aa)
Glyoxalase/bleomycin resistance protein/dioxygenase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMM0_AGRRK
Glyoxalase/bleomycin resistance protein/dioxygenase protein
Putative ring-cleavage extradiol dioxygenase {ECO:0000313|EMBL:EJK88097.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_300_bf_scaffold_87_curated_112
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115301..116329
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MND4_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET94323.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCNpilot_cont_300_bf_scaffold_87_curated_113
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116361..117830
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QHQ6_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KFE64305.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_114
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

118005..118661
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LP64_BURGS
Uncharacterized protein {ECO:0000313|EMBL:KJS45665.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_115
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118677..119591)
DNA (915bp) protein (305aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
prpB; carboxyphosphonoenolpyruvate phosphonomutase (EC:2.7.8.23); K01003 carboxyvinyl-carboxyphosphonate phosphorylmutase [EC:2.7.8.23] rbh
Carboxyphosphonoenolpyruvate phosphonomutase n=1 Tax=Nitratireductor indicus C115 RepID=K2P245_9RHIZ
SCNpilot_cont_300_bf_scaffold_87_curated_116
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119779..120966)
DNA (1188bp) protein (396aa)
2-methylcitrate synthase/citrate synthase II (EC:2.3.3.5); K01659 2-methylcitrate synthase [EC:2.3.3.5]
Citrate synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWQ7_9BRAD
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_300_bf_scaffold_87_curated_117
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120976..122529)
DNA (1554bp) protein (518aa)
2-methylcitrate dehydratase; K01720 2-methylcitrate dehydratase [EC:4.2.1.79]
2-methylcitrate dehydratase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QGC0_RHOPT
2-methylcitrate dehydratase {ECO:0000313|EMBL:KJC61227.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_300_bf_scaffold_87_curated_118
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122526..122948)
DNA (423bp) protein (141aa)
Thioesterase superfamily protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QGB9_RHOPT
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ACF01156.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_300_bf_scaffold_87_curated_119
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123095..124519
DNA (1425bp) protein (475aa)
Transcriptional regulator, XRE family n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QGB8_RHOPT
XRE family transcriptional regulator; K07110
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACF01155.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_300_bf_scaffold_87_curated_120
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124520..125728)
DNA (1209bp) protein (403aa)
nahG; Salicylate hydroxylase (EC:1.14.13.1)
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5Y8R4_9BRAD
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:EHR00203.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
Displaying items 91-120 of 1758 in total

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