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SCNpilot_cont_300_bf_scaffold_87_curated

Search features with annotation key words

Displaying items 1-30 of 1758 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_87_curated_1
bacterium YEK0313, Bacteria

Not on your lists

comp(1..1275)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7FND6_9RHOB
Extracellular serine protease {ECO:0000313|EMBL:CEJ10039.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_300_bf_scaffold_87_curated_2
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1639..1845
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKM2_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG11045.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_87_curated_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2003..2272
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WAM8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEA05705.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_4
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2276..3310)
DNA (1035bp) protein (345aa)
Acyl-carrier domain-containing protein id=2458317 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
acyl carrier protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_cont_300_bf_scaffold_87_curated_5
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3307..5496)
DNA (2190bp) protein (730aa)
transketolase, central region; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
Dehydrogenase/transketolase family protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CYE0_9RHOB
Dehydrogenase/transketolase family protein {ECO:0000313|EMBL:EEX08402.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silicibacter lacuscaerulensis ITI-1157.;"
SCNpilot_cont_300_bf_scaffold_87_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5952..6887
DNA (936bp) protein (312aa)
Putative Bug-like extracytoplasmic solute binding receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1X4Y9_VARPD
putative Bug-like extracytoplasmic solute binding receptor, TTT family
Putative Bug-like extracytoplasmic solute binding receptor, TTT family {ECO:0000313|EMBL:AGU47982.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_87_curated_7
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6962..8710
DNA (1749bp) protein (583aa)
thiamine pyrophosphate protein domain-containing protein TPP-binding protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate protein domain protein TPP-binding protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAS1_SPHTD
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_300_bf_scaffold_87_curated_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8720..10117)
DNA (1398bp) protein (466aa)
Uncharacterized protein involved in propionate catabolism (EC:4.2.1.79)
Putative MmgE/PrpD n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1J7_9RHIZ
Putative MmgE/PrpD {ECO:0000313|EMBL:CCV11237.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_cont_300_bf_scaffold_87_curated_9
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10228..11223
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2IXS9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGE02083.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_10
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11275..11922
DNA (648bp) protein (216aa)
Protein MTH_152 n=1 Tax=Methanobacterium sp. MB1 RepID=U6EAF0_9EURY
flavin reductase domain protein fmn-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_300_bf_scaffold_87_curated_11
bacterium YEK0313, Bacteria

Not on your lists

comp(11947..12534)
DNA (588bp) protein (196aa)
UPI0003CE42A8 related cluster n=1 Tax=unknown RepID=UPI0003CE42A8
Uncharacterized protein {ECO:0000313|EMBL:CEJ11118.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_12
Mycobacterium parascrofulaceum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12594..13148)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Mycobacterium parascrofulaceum ATCC BAA-614 RepID=D5P5W9_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:EFG78523.1}; TaxID=525368 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium parascrofulaceum ATCC BAA-614.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13180..13494)
DNA (315bp) protein (105aa)
Putative transmembrane protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRQ4_STEMA
Membrane protein {ECO:0000313|EMBL:AKC87373.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Putative transmembrane protein
SCNpilot_cont_300_bf_scaffold_87_curated_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13577..14221)
DNA (645bp) protein (215aa)
UPI0003D06877 related cluster n=1 Tax=unknown RepID=UPI0003D06877
TetR family transcriptional regulator {ECO:0000313|EMBL:KGM34259.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_87_curated_15
unknown

Not on your lists

14365..14673
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_87_curated_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14677..17832
DNA (3156bp) protein (1052aa)
UPI0003CF5935 related cluster n=1 Tax=unknown RepID=UPI0003CF5935
Multidrug efflux system protein {ECO:0000313|EMBL:CDX33455.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
SCNpilot_cont_300_bf_scaffold_87_curated_17
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17847..19013
DNA (1167bp) protein (389aa)
UPI0003CF462C related cluster n=1 Tax=unknown RepID=UPI0003CF462C
Hemolysin D {ECO:0000313|EMBL:ESX73265.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
RND family efflux transporter, MFP subunit
SCNpilot_cont_300_bf_scaffold_87_curated_18
unknown

Not on your lists

19123..19620
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036065C6
SCNpilot_cont_300_bf_scaffold_87_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19621..20877)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B8549
Uncharacterized protein {ECO:0000313|EMBL:KFC66829.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_20
unknown

Not on your lists

comp(20874..21008)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_87_curated_21
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21032..21217)
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=4 Tax=Bradyrhizobiaceae RepID=RL32_OLICO
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_cont_300_bf_scaffold_87_curated_22
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21495..22418
DNA (924bp) protein (308aa)
polyprenyl synthetase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000378FA43
polyprenyl synthetase
Polyprenyl synthetase {ECO:0000313|EMBL:CCJ07014.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_87_curated_23
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22436..23176
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QSY4_METTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB94075.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_87_curated_24
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23173..24051)
DNA (879bp) protein (293aa)
LysR family transcriptional regulator n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035DE8CD
LysR family transcriptional regulator {ECO:0000313|EMBL:ETR76061.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
transcriptional regulator rbh
SCNpilot_cont_300_bf_scaffold_87_curated_25
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24142..24879
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TNU5_9PROT
Permease {ECO:0000313|EMBL:ETR76062.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_26
bacterium YEK0313, Bacteria

Not on your lists

24891..25163
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I267_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEJ12244.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_27
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25199..26380
DNA (1182bp) protein (394aa)
peptidase S13, D-Ala-D-Ala carboxypeptidase C; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Putative D-alanyl-D-alanine carboxypeptidase n=2 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YLV1_MOBAS
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:KFG69573.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_300_bf_scaffold_87_curated_28
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26561..27853)
DNA (1293bp) protein (431aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Methyloferula stellata RepID=UPI00037EC390
SCNpilot_cont_300_bf_scaffold_87_curated_29
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27940..28410)
DNA (471bp) protein (157aa)
Putative ferric uptake regulator, Fur family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBE6_BEII9
ferric uptake regulator family protein; K09823 Fur family transcriptional regulator, zinc uptake regulator
Putative ferric uptake regulator, Fur family {ECO:0000313|EMBL:ACB96572.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_87_curated_30
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28519..29304
DNA (786bp) protein (262aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZP8_9RHIZ
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EIM29440.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Displaying items 1-30 of 1758 in total

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