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SCNpilot_expt_1000_bf_scaffold_24246_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_24246_curated_1
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..737
DNA (735bp) protein (245aa)
PREDICTED: elongation factor Tu, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1A0A7
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
tufB1; Elongation factor Tu (EF-Tu)
SCNpilot_expt_1000_bf_scaffold_24246_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1369..1569
DNA (201bp) protein (67aa)
Protein translocase subunit SecE n=3 Tax=Agrobacterium RepID=Q7CY67_AGRT5
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_expt_1000_bf_scaffold_24246_curated_3
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1588..2118
DNA (531bp) protein (177aa)
transcription antitermination protein NusG n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035FFBC9
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
nusG; Transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG
SCNpilot_expt_1000_bf_scaffold_24246_curated_4
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2267..2698
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PYT1_9RHIZ
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
rplK; 50S ribosomal protein L11
SCNpilot_expt_1000_bf_scaffold_24246_curated_5
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2700..3398
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Rhizobium sp. RepID=L0NEA0_RHISP
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
SCNpilot_expt_1000_bf_scaffold_24246_curated_6
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3741..4259
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Rhizobium sp. RepID=L0NDR8_RHISP
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_expt_1000_bf_scaffold_24246_curated_7
Bradyrhizobium sp. SEMIA 6002, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4801..6006)
DNA (1206bp) protein (402aa)
RNA polymerase beta subunit (Fragment) n=1 Tax=Bradyrhizobium sp. SEMIA 6002 RepID=F5B5B4_9BRAD
RNA polymerase beta subunit {ECO:0000313|EMBL:AEC49863.1}; Flags: Fragment;; TaxID=1005742 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. SEMIA 6002.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_24246_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6360..6662
DNA (303bp) protein (101aa)
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0W8T6_9RHIZ
Displaying 8 items

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