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SCNpilot_expt_1000_bf_scaffold_1015_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1015_curated_1
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117..659
DNA (543bp) protein (181aa)
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J849_AGRRK
transcriptional regulator protein
TetR family transcriptional regulator {ECO:0000313|EMBL:KEA06034.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_2
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

678..1019
DNA (342bp) protein (114aa)
multidrug transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000362B214
Small multidrug resistance protein {ECO:0000313|EMBL:EPE97223.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
methyl viologen/ethidium resistance transmembrane protein; K03297 small multidrug resistance protein, SMR family
SCNpilot_expt_1000_bf_scaffold_1015_curated_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1177..1962
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HGB2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE97779.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1015_curated_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1973..3019
DNA (1047bp) protein (349aa)
Oxidoreductase protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S6K6_RHIET
oxidoreductase protein
Oxidoreductase protein {ECO:0000313|EMBL:AIC28607.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_5
unknown

Not on your lists

3152..3370
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1015_curated_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3450..3611
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTP6_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74587.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_7
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4439..4678
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BHE8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL50804.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1015_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4730..5182)
DNA (453bp) protein (151aa)
hypothetical protein n=2 Tax=Rhizobium leguminosarum RepID=UPI0003613B95
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK09108.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5229..6248)
DNA (1020bp) protein (340aa)
Putative LysR family transcriptional regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V2H7_9RHIZ
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:ENN88040.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator protein, LysR family
SCNpilot_expt_1000_bf_scaffold_1015_curated_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6521..7591
DNA (1071bp) protein (357aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00035D7B06
Multiple sugar-binding periplasmic receptor ChvE {ECO:0000313|EMBL:AHK45147.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ABC-type xylose transport system, periplasmic component
SCNpilot_expt_1000_bf_scaffold_1015_curated_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7749..9284
DNA (1536bp) protein (512aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K10548 putative multiple sugar transport system ATP-binding protein
Monosaccharide-transporting ATPase n=7 Tax=Rhizobium meliloti RepID=F6C3F1_SINMB
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDH83153.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_12
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9284..10495
DNA (1212bp) protein (404aa)
ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI0003757CFA
sugar ABC transporter permease; K10547 putative multiple sugar transport system permease protein
ABC transporter (Sugar), membrane spanning protein {ECO:0000313|EMBL:ACP26171.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_13
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10661..11659
DNA (999bp) protein (333aa)
GguC protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J808_AGRRK
GguC protein {ECO:0000313|EMBL:KEA06077.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
gguC; GguC protein
SCNpilot_expt_1000_bf_scaffold_1015_curated_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11722..13467
DNA (1746bp) protein (582aa)
Dihydroxy-acid dehydratase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPN2_RHITR
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:AGB72050.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
dihydroxy-acid dehydratase
SCNpilot_expt_1000_bf_scaffold_1015_curated_15
unknown

Not on your lists

comp(13368..13592)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1015_curated_16
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13683..14744)
DNA (1062bp) protein (354aa)
Response regulator containing a CheY-like receiver domain and an HD-GYP domain n=1 Tax=Rhizobium sp. CF142 RepID=J1SLJ7_9RHIZ
Response regulator containing a CheY-like receiver domain and an HD-GYP domain {ECO:0000313|EMBL:EJJ26068.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
two-component response regulator transcriptional regulatory protein; K07814 putative two-component system response regulator
SCNpilot_expt_1000_bf_scaffold_1015_curated_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15082..15903)
DNA (822bp) protein (274aa)
Transglutaminase-like enzyme, predicted cysteine protease n=1 Tax=Rhizobium sp. CF080 RepID=J3BYT6_9RHIZ
Transglutaminase domain-containing protein {ECO:0000313|EMBL:EUB96756.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1015_curated_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15924..16865)
DNA (942bp) protein (314aa)
Uncharacterized protein n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B5ZZ27_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI56170.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16873..18267)
DNA (1395bp) protein (465aa)
Carboxylate-amine ligase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPM6_RHITR
carboxylate-amine ligase
Carboxylate-amine ligase {ECO:0000313|EMBL:AGB72045.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_20
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18638..19519
DNA (882bp) protein (294aa)
Putative drug/metabolite exporter (DME) family transporter n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPK6_RHITR
putative drug/metabolite exporter (DME) family transporter
Putative drug/metabolite exporter (DME) family transporter {ECO:0000313|EMBL:AGB72044.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_21
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19571..20968)
DNA (1398bp) protein (466aa)
rhlE; dead-box ATP-dependent RNA helicase (EC:3.6.1.-); K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DNA/RNA helicase, superfamily II n=1 Tax=Rhizobium sp. CF080 RepID=J2JHU4_9RHIZ
RNA helicase {ECO:0000313|EMBL:KGE01235.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_22
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21311..21607)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00036838CA
Uncharacterized protein {ECO:0000313|EMBL:EJJ26061.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1015_curated_23
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21726..23309)
DNA (1584bp) protein (528aa)
hypothetical protein; K14083 trimethylamine methyltransferase [EC:2.1.1.-]
Trimethylamine:corrinoid methyltransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2DM98_9RHIZ
Trimethylamine:corrinoid methyltransferase {ECO:0000313|EMBL:EJK84042.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_24
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23529..27212
DNA (3684bp) protein (1228aa)
PAS domain S-box n=1 Tax=Rhizobium sp. CF080 RepID=J2JCV0_9RHIZ
Two component sensor kinase/response regulator hybrid {ECO:0000313|EMBL:CDN55011.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
two component sensor kinase/response regulator hybrid rbh
SCNpilot_expt_1000_bf_scaffold_1015_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27250..28005)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7Z5_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM27316.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_26
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28082..29191
DNA (1110bp) protein (370aa)
goxB; glycine oxidase (EC:1.4.3.19); K03153 glycine oxidase [EC:1.4.3.19]
D-amino acid oxidase n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003781672
D-amino acid oxidase {ECO:0000313|EMBL:KGE01230.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_27
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29281..29988
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000372E5C9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EUB96770.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30040..31011
DNA (972bp) protein (324aa)
urate catabolism protein (EC:3.5.1.41)
Putative urate catabolism protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VVB7_RHILT
Putative urate catabolism protein {ECO:0000313|EMBL:EJC77346.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1015_curated_29
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31008..31505
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7Z1_AGRRK
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase protein {ECO:0000313|EMBL:AIC28488.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1015_curated_30
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31569..32069
DNA (501bp) protein (167aa)
allA; ureidoglycolate hydrolase (EC:3.5.3.19); K01483 ureidoglycolate hydrolase [EC:3.5.3.19]
Ureidoglycolate lyase {ECO:0000255|HAMAP-Rule:MF_00616}; EC=4.3.2.3 {ECO:0000255|HAMAP-Rule:MF_00616};; Ureidoglycolatase {ECO:0000255|HAMAP-Rule:MF_00616}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
Ureidoglycolate lyase n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=ALLA_RHIEC
Displaying items 1-30 of 52 in total

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