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SCNpilot_expt_1000_bf_scaffold_2456_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2456_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..307
DNA (306bp) protein (102aa)
GTPase Era n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVX1_9RHIZ
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
era; GTP-binding protein Era
SCNpilot_expt_1000_bf_scaffold_2456_curated_2
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

394..1143
DNA (750bp) protein (250aa)
cAMP-binding protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L2V4_9RHIZ
cAMP-binding protein {ECO:0000313|EMBL:EJJ27837.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
Crp/Fnr family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2456_curated_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1489..1857
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003631C37
CheY-like receiver domain-containing protein {ECO:0000313|EMBL:EJJ27840.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1908..2657
DNA (750bp) protein (250aa)
DNA repair protein RecO n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003624417
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
recO; DNA repair protein RecO
SCNpilot_expt_1000_bf_scaffold_2456_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2755..3609)
DNA (855bp) protein (285aa)
PREDICTED: MOSC domain-containing protein 2, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C13DEF
Iron-sulfur protein {ECO:0000313|EMBL:EPR07497.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
MOSC domain-containing protein; K07140
SCNpilot_expt_1000_bf_scaffold_2456_curated_6
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3707..4243)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L914_AGRSH
hypothetical protein; K06950 uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:ADY63966.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_2456_curated_7
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4411..7128)
DNA (2718bp) protein (906aa)
Putative membrane protein n=1 Tax=Rhizobium sp. CF080 RepID=J2IMF5_9RHIZ
Membrane protein {ECO:0000313|EMBL:KGD99158.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7253..7759
DNA (507bp) protein (169aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
sodC; superoxide dismutase (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003800829
SCNpilot_expt_1000_bf_scaffold_2456_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7789..8073)
DNA (285bp) protein (95aa)
Small-conductance mechanosensitive channel n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3G9_9RHIZ
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:EYR78026.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8613..9152)
DNA (540bp) protein (180aa)
tyrosine phosphatase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000376BCEA
Protein tyrosine phosphatase {ECO:0000313|EMBL:KDP71094.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
tyrosine phosphatase
SCNpilot_expt_1000_bf_scaffold_2456_curated_11
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9149..9769)
DNA (621bp) protein (207aa)
Hydrolase protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HM20_9RHIZ
Hydrolase protein {ECO:0000313|EMBL:EPE99120.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
putative metal dependent phosphohydrolase
SCNpilot_expt_1000_bf_scaffold_2456_curated_12
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9766..10599)
DNA (834bp) protein (278aa)
Folate-binding protein YgfZ n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I1N4_9RHIZ
Folate-binding protein YgfZ {ECO:0000313|EMBL:EPE99121.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
folate-binding protein YgfZ; K06980
SCNpilot_expt_1000_bf_scaffold_2456_curated_13
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10672..11394)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L2X2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ27852.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_14
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11445..11702)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DQ64_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEA07424.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11804..12142)
DNA (339bp) protein (113aa)
TIGR02301 family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0C6R4_RHILT
TIGR02301 family protein {ECO:0000313|EMBL:EJC78642.1}; Flags: Precursor;; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12244..12669)
DNA (426bp) protein (142aa)
ADP-ribose pyrophosphatase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H0P6_RHILT
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EJC73293.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
ADP-ribose pyrophosphatase, mutT/nudiX family
SCNpilot_expt_1000_bf_scaffold_2456_curated_17
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13268..13912
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HK41_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE99127.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_18
unknown

Not on your lists

comp(14011..14166)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2456_curated_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14405..15277)
DNA (873bp) protein (291aa)
CDP-diacylglycerol/serine O-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036B4AE8
CDP-diacylglycerol/serine O-phosphatidyltransferase {ECO:0000313|EMBL:ENN86295.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_2456_curated_20
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15298..15996)
DNA (699bp) protein (233aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
psd; phosphatidylserine decarboxylase proenzyme (EC:4.1.1.65)
phosphatidylserine decarboxylase n=1 Tax=Rhizobium mongolense RepID=UPI0003B60680
SCNpilot_expt_1000_bf_scaffold_2456_curated_21
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16136..18022)
DNA (1887bp) protein (629aa)
ABC transporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q3P8_9RHIZ
ABC transporter {ECO:0000313|EMBL:EKF58329.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_2456_curated_22
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18286..20322)
DNA (2037bp) protein (679aa)
peptidoglycan-binding protein LysM n=1 Tax=Rhizobium mongolense RepID=UPI0003B601A9
Peptidoglycan-binding/lysin domain-containing protein {ECO:0000313|EMBL:AJD40669.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_23
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20590..21210
DNA (621bp) protein (207aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC98_AGRRK
Lysine decarboxylase {ECO:0000313|EMBL:KEA07414.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein; K06966
SCNpilot_expt_1000_bf_scaffold_2456_curated_24
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21232..22140)
DNA (909bp) protein (303aa)
permease n=1 Tax=Rhizobium meliloti RepID=UPI00038023C2
RarD protein, chloramphenicol transporter {ECO:0000313|EMBL:KEC81111.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
rarD; RarD protein; K05786 chloramphenicol-sensitive protein RarD
SCNpilot_expt_1000_bf_scaffold_2456_curated_25
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22410..23150)
DNA (741bp) protein (247aa)
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKM3_RHITR
2-isopropylmalate synthase/homocitrate synthase family protein
2-isopropylmalate synthase/homocitrate synthase family protein {ECO:0000313|EMBL:AGB70600.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2456_curated_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23368..24198
DNA (831bp) protein (277aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG08372.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_2456_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24023..24976)
DNA (954bp) protein (318aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pip; proline iminopeptidase (EC:3.4.11.5)
Proline iminopeptidase Pip n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0J6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2456_curated_28
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24973..25452)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AB19_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE58319.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_2456_curated_29
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25449..25850)
DNA (402bp) protein (134aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y9W9_9RHIZ
Putative glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CDN47213.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_2456_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25875..27260)
DNA (1386bp) protein (462aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
cysS; cysteine tRNA synthetase (Cysteine--tRNA ligase) (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UB27_RHIRD
Displaying items 1-30 of 38 in total

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