name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_1389_curated_1
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2..1054
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVQ2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EGL62970.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1051..2301)
|
trimethylamine methyltransferase; K14083 trimethylamine methyltransferase [EC:2.1.1.-]
Trimethylamine methyltransferase n=4 Tax=Rhizobium meliloti RepID=F6C4D0_SINMB
Putative membrane protein, similar to methyltransferases {ECO:0000313|EMBL:CAC49244.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
|
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SCNpilot_expt_1000_bf_scaffold_1389_curated_3
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2517..3272)
|
ABC transporter ATP-binding protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
ABC-type polar amino acid transport system, ATPase component n=1 Tax=Rhizobium sp. CF122 RepID=J3BLQ0_9RHIZ
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL54011.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_4
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3269..3949)
|
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Rhizobium sp. CF080 RepID=J2ITX2_9RHIZ
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:EUB98630.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
polar amino acid ABC transcriptional regulator inner membrane protein; K10009 cystine transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4047..4820)
|
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W7P8_RHILT
L-cystine ABC transporter substrate-binding protein TcyA {ECO:0000313|EMBL:AJC81526.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
family 3 extracellular solute-binding protein; K02424 cystine transport system substrate-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_6
uncultured bacterium, Bacteria
|
Not on your lists |
comp(4967..5704)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV53_9RHIZ
L,D-transpeptidase catalytic domain protein {ECO:0000313|EMBL:AIA14376.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ErfK/YbiS/YcfS/YnhG family protein
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_7
Brucella sp. F5/99, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6076..6867
|
putative enoyl-CoA hydratase/isomerase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
Enoyl-CoA hydratase-like protein n=6 Tax=Brucella RepID=C9U1K3_BRUPB
Enoyl-CoA hydratase {ECO:0000313|EMBL:EEY24707.1}; TaxID=437701 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. F5/99.;"
|
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SCNpilot_expt_1000_bf_scaffold_1389_curated_8
Ochrobactrum sp. SJY1, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7044..7565)
|
sarcosine oxidase subunit gamma; K00305 sarcosine oxidase, subunit gamma [EC:1.5.3.1]
Putative sarcosine oxidase gamma subunit protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DGT4_9RHIZ
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:AIH15821.1}; TaxID=1526653 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. SJY1.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_9
Ochrobactrum sp. SJY1, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7582..10545)
|
sarcosine oxidase subunit alpha n=1 Tax=Rhizobium radiobacter RepID=UPI00035DC4BA
Sarcosine oxidase alpha subunit {ECO:0000313|EMBL:AIH15822.1}; TaxID=1526653 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. SJY1.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10542..10814)
|
soxD; sarcosine oxidase delta subunit; K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
Sarcosine oxidase delta subunit n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1S1_AGRVS
Sarcosine oxidase delta subunit {ECO:0000313|EMBL:ACM38819.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_11
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10941..12191)
|
sarcosine oxidase subunit beta; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
sarcosine oxidase subunit beta n=1 Tax=Rhizobium meliloti RepID=UPI0003803363
Sarcosine oxidase, beta subunit family {ECO:0000313|EMBL:ABR62111.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
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|
SCNpilot_expt_1000_bf_scaffold_1389_curated_12
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12282..13265
|
AraC family transcriptional regulator n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JIQ2_9RHIZ
AraC family transcriptional regulator {ECO:0000313|EMBL:EGL62329.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
glxA; AraC family transcriptional regulator
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_13
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13539..14171
|
Putative uncharacterized protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E1X6_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGV31184.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14678..15127)
|
Predicted protein n=1 Tax=Mycobacterium tuberculosis K85 RepID=D6FRR4_MYCTU
Uncharacterized protein {ECO:0000313|EMBL:CDX34209.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_15
Ustilago maydis, Ustilago, Ustilaginales, Ustilaginomycetes, Basidiomycota, Fungi
|
Not on your lists |
comp(15203..15619)
|
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003105EF7
hypothetical protein
Chromosome 4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS70030.1}; TaxID=237631 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago.;" source="Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_16
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria
|
Not on your lists |
15931..16512
|
PAS domain S-box n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WJJ5_9CYAN
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AFZ21291.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_17
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16633..17121
|
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F0803C
PAS/PAC sensor signal transduction histidine kinase
PAS/PAC sensor signal transduction histidine kinase {ECO:0000313|EMBL:ACB33174.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17118..17837
|
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037F02A0
DNA-binding response regulator in two-component regulatory system wtih UhpB {ECO:0000313|EMBL:CDX19118.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
two component LuxR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_19
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17847..19451)
|
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000375B44B
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
Na+/H+ antiporter {ECO:0000313|EMBL:ACB94870.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
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SCNpilot_expt_1000_bf_scaffold_1389_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19539..20747)
|
Fosmidomycin resistance protein Fsr n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLJ2_9RHIZ
Fosmidomycin resistance protein {ECO:0000313|EMBL:KDP75639.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
major facilitator superfamily transporter
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20945..21148)
|
Cold shock protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERK1_9RHIZ
Cold shock protein {ECO:0000313|EMBL:EYR84585.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_22
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21830..22288
|
PEP phosphonomutase-like enzyme n=1 Tax=Rhizobium sp. CF142 RepID=J1SWL3_9RHIZ
PEP phosphonomutase-like enzyme {ECO:0000313|EMBL:EJJ29633.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22374..22688
|
ArsR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI0003693656
regulatory protein ArsR
ArsR family transcriptional regulator {ECO:0000313|EMBL:KDP70790.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_24
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22852..23037
|
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003606564
Conserved hypothethetical protein {ECO:0000313|EMBL:CDN58495.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_25
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23084..23704
|
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizobium sp. Pop5 RepID=K0VL52_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_26
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23741..25057)
|
Aminotransferase n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XDW9_SINMM
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:KJF67905.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
Aminotransferase
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_27
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25061..26110)
|
Putative homoserine kinase type II (Protein kinase fold) n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IL06_RHIML
Putative homoserine kinase type II {ECO:0000313|EMBL:AHK46036.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
Putative homoserine kinase type II (protein kinase fold)
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_28
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26190..26867
|
GntR family transcriptional regulator n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G1T2_RHIML
GntR family transcriptional regulator {ECO:0000313|EMBL:EHK76676.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
Transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26934..27674
|
Protein FixR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D225_9RHIZ
Dehydrogenase {ECO:0000313|EMBL:EYR78092.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fixR; Protein fixR
|
|
SCNpilot_expt_1000_bf_scaffold_1389_curated_30
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27974..29023
|
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI00030D072F
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHK46033.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ABC transporter,periplasmic solute-binding protein
|