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SCNpilot_expt_1000_bf_scaffold_1252_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1252_curated_1
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..251)
DNA (249bp) protein (83aa)
Putative 3-demethylubiquinone-9 3-O-methyltransferase protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A821_RHIET
Putative 3-demethylubiquinone-9 3-O-methyltransferase protein {ECO:0000313|EMBL:EGE59403.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1252_curated_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

408..773
DNA (366bp) protein (122aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003805271
LysR family transcriptional regulator
Putative transcriptional regulatory protein, LysR family {ECO:0000313|EMBL:AFL53926.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1078..1482
DNA (405bp) protein (135aa)
Transcriptional regulator, XRE family n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B6A477_RHILW
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACI59210.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1610..1879)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1TI19_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ31576.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1252_curated_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1957..2376)
DNA (420bp) protein (140aa)
toxin n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036CAB93
Putative trifolitoxin related protein {ECO:0000313|EMBL:EPE94907.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
TfuA domain protein core
SCNpilot_expt_1000_bf_scaffold_1252_curated_6
unknown

Not on your lists

2501..2839
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1252_curated_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2680..3939)
DNA (1260bp) protein (420aa)
YcaO-like protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5STZ0_RHIET
YcaO-like protein
YcaO-like protein {ECO:0000313|EMBL:AGS25069.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_8
unknown

Not on your lists

comp(3950..4078)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1252_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4300..6264)
DNA (1965bp) protein (655aa)
TfuA n=1 Tax=Rhizobium leguminosarum bv. trifolii RepID=Q52870_RHILT
TfuA {ECO:0000313|EMBL:AAB17513.1}; TaxID=386 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii.;"
SARP family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1252_curated_10
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6393..7022)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003711B9B
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:GAK72773.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1252_curated_11
unknown

Not on your lists

7145..7405
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1252_curated_12
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7414..8667)
DNA (1254bp) protein (418aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Rhizobium sp. CF122 RepID=J3BMP8_9RHIZ
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:EJL53854.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
MFS permease; K03445 MFS transporter, DHA1 family, purine ribonucleoside efflux pump rbh
SCNpilot_expt_1000_bf_scaffold_1252_curated_13
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8695..9471)
DNA (777bp) protein (259aa)
4-hydroxy-2-oxovalerate aldolase {ECO:0000313|EMBL:EUC01188.1}; EC=4.1.3.39 {ECO:0000313|EMBL:EUC01188.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Rhizobium sp. CF080 RepID=J2IHH8_9RHIZ
4-hydroxy-2-oxovalerate aldolase
SCNpilot_expt_1000_bf_scaffold_1252_curated_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9525..10181)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035F75F5
chromosome segregation/condensation ScpB-like protein
Chromosome segregation/condensation ScpB-like protein {ECO:0000313|EMBL:AGS24364.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_15
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10183..11514)
DNA (1332bp) protein (444aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium sp. AP16 RepID=J2D899_9RHIZ
D-amino acid oxidase {ECO:0000313|EMBL:KEA08621.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
D-amino acid oxidase
SCNpilot_expt_1000_bf_scaffold_1252_curated_16
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11601..12665)
DNA (1065bp) protein (355aa)
ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
Ornithine cyclodeaminase n=2 Tax=Brucella RepID=D1D0Q8_9RHIZ
Ornithine cyclodeaminase {ECO:0000313|EMBL:EEY28270.1}; TaxID=520489 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis bv. 5 str. 513.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_17
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12665..13585)
DNA (921bp) protein (307aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
rocF; arginase; K01476 arginase [EC:3.5.3.1]
Arginase family n=1 Tax=uncultured organism RepID=T1W9T8_9ZZZZ
SCNpilot_expt_1000_bf_scaffold_1252_curated_18
Brucella abortus, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13701..14138
DNA (438bp) protein (146aa)
Transcriptional regulator, AsnC family n=169 Tax=Brucella RepID=B2SDC3_BRUA1
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:EEX60261.1}; TaxID=520450 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella abortus bv. 2 str. 86/8/59.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14155..15084
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JB26_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:GAJ96221.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein; K08994 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_1252_curated_20
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15280..16818
DNA (1539bp) protein (513aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
Histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LDE4_AGRSH
SCNpilot_expt_1000_bf_scaffold_1252_curated_21
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16896..19511)
DNA (2616bp) protein (872aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SIA3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ24983.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_22
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19839..20069
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PY61_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM74859.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_23
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20161..22047)
DNA (1887bp) protein (629aa)
Chaperone protein HtpG n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X185_RHIFR
htpG; chaperone protein HtpG
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_24
unknown

Not on your lists

22233..22358
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1252_curated_25
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22381..22731
DNA (351bp) protein (117aa)
Arsenate reductase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7I5_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:AHK43097.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
arsenate reductase
SCNpilot_expt_1000_bf_scaffold_1252_curated_26
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22732..23187)
DNA (456bp) protein (152aa)
Rrf2 family transcriptional regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B7770D
Transcriptional regulator protein {ECO:0000313|EMBL:AJD42331.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_1252_curated_27
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23253..24557)
DNA (1305bp) protein (435aa)
pncB; nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00570}; Short=NAPRTase {ECO:0000255|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000255|HAMAP-Rule:MF_00570};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Nicotinate phosphoribosyltransferase n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5RY64_RHIET
SCNpilot_expt_1000_bf_scaffold_1252_curated_28
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24696..25655)
DNA (960bp) protein (320aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit; K12972 gyoxylate/hydroxypyruvate reductase A [EC:1.1.1.79 1.1.1.81]
2-hydroxyacid dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000379620D
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit {ECO:0000313|EMBL:EPF00287.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_1252_curated_29
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25667..25978)
DNA (312bp) protein (104aa)
microcin C ABC transporter ATP-binding protein YejF n=1 Tax=Rhizobium leguminosarum RepID=UPI00036FF49C
Microcin ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGD98133.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
ABC transporter ATP-binding protein; K13896 microcin C transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1252_curated_30
unknown

Not on your lists

26077..26241
DNA (165bp) protein (55aa)

This feature has no annotations

Displaying 30 items

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