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SCNpilot_expt_1000_bf_scaffold_2382_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2382_curated_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..395)
DNA (393bp) protein (131aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]
PREDICTED: glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C159AD
SCNpilot_expt_1000_bf_scaffold_2382_curated_2
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(539..997)
DNA (459bp) protein (153aa)
UPI0003CF4F66 related cluster n=1 Tax=unknown RepID=UPI0003CF4F66
6-phosphogluconate dehydrogenase {ECO:0000313|EMBL:GAK69925.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
6-phosphogluconate dehydrogenase, decarboxylating
SCNpilot_expt_1000_bf_scaffold_2382_curated_3
unknown

Not on your lists

1137..1583
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2382_curated_4
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1596..4001)
DNA (2406bp) protein (802aa)
glucan 1,4-alpha-glucosidase (EC:3.2.1.3)
Glucan 1,4-alpha-glucosidase {ECO:0000313|EMBL:AEH85587.1}; EC=3.2.1.3 {ECO:0000313|EMBL:AEH85587.1};; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Glucan 1,4-alpha-glucosidase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YD52_MESOW
SCNpilot_expt_1000_bf_scaffold_2382_curated_5
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4355..5236)
DNA (882bp) protein (294aa)
Transcriptional Regulator, LysR family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NM60_9RHOB
Transcriptional Regulator, LysR family protein {ECO:0000313|EMBL:EAV46155.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
lysR; LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2382_curated_6
unknown

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comp(5281..6006)
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2382_curated_7
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6140..6553
DNA (414bp) protein (138aa)
Peptidase M24 n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CLP2_9RHOB
Peptidase M24 {ECO:0000313|EMBL:EFO30441.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
peptidase
SCNpilot_expt_1000_bf_scaffold_2382_curated_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6708..7706
DNA (999bp) protein (333aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F2C89
glycine betaine-binding periplasmic protein; K02002 glycine betaine/proline transport system substrate-binding protein
Plasmid pSfHH103e complete sequence {ECO:0000313|EMBL:CCE99362.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_2382_curated_9
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7864..8382)
DNA (519bp) protein (173aa)
Dehydrogenase/reductase oxidoreductase protein n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NCYC 2677 / UAMH 7654) RepID=J6F5X8_TRIAS
Uncharacterized protein {ECO:0000313|EMBL:AKH99971.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_2382_curated_10
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8638..9957)
DNA (1320bp) protein (440aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Ahrensia kielensis RepID=UPI0003689D3C
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:BAO83787.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
Inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_11
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9954..10382)
DNA (429bp) protein (143aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VKC5_9RHOB
Branched-chain amino acid ABC-type transport system, permease components {ECO:0000313|EMBL:BAO81506.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_12
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10964..11674)
DNA (711bp) protein (237aa)
Branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3AEA6_9RHOB
Branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:EYD73542.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
livF2; high-affinity branched-chain amino acid transport ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_13
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11671..12480)
DNA (810bp) protein (270aa)
branched-chain amino acid transport system, ATP-binding protein (EC:3.6.3.22)
Lipopolysaccharide export system ATP-binding protein LptB n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5AGE5_9PROT
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:BAO81508.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
SCNpilot_expt_1000_bf_scaffold_2382_curated_14
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12538..13728)
DNA (1191bp) protein (397aa)
Extracellular ligand-binding receptor n=1 Tax=Citreicella sp. SE45 RepID=D0D225_9RHOB
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EEX14063.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
putative periplasmic ligand-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_15
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13952..14644
DNA (693bp) protein (231aa)
GntR family transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C6Z0_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EIM77592.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_16
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14724..15566)
DNA (843bp) protein (281aa)
Xanthine/uracil permease n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YH15_PARAH
xanthine/uracil permease
Xanthine/uracil permease {ECO:0000313|EMBL:AGT10763.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_2382_curated_17
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16145..16507)
DNA (363bp) protein (121aa)
CMP/dCMP deaminase zinc-binding protein (EC:3.5.4.-)
CMP/dCMP deaminase zinc-binding protein {ECO:0000313|EMBL:AGT10762.1}; EC=3.5.4.- {ECO:0000313|EMBL:AGT10762.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XZP4_PARAH
SCNpilot_expt_1000_bf_scaffold_2382_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17630..18571
DNA (942bp) protein (314aa)
phosphohydrolase n=1 Tax=Rhizobium phaseoli RepID=UPI0002F09B44
Orf_Bo164 {ECO:0000313|EMBL:AAZ50548.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
metal dependent phosphohydrolase
SCNpilot_expt_1000_bf_scaffold_2382_curated_19
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18826..20199
DNA (1374bp) protein (458aa)
yddV; diguanylate cyclase YddV (EC:2.7.7.65); K13069 diguanylate cyclase [EC:2.7.7.65]
Diguanylate cyclase YddV {ECO:0000313|EMBL:AEI05979.1}; EC=2.7.7.65 {ECO:0000313|EMBL:AEI05979.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Diguanylate cyclase YddV n=2 Tax=Oligotropha carboxidovorans RepID=B6JHB4_OLICO
SCNpilot_expt_1000_bf_scaffold_2382_curated_20
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20273..21820
DNA (1548bp) protein (516aa)
methyl-accepting chemotaxis protein n=1 Tax=Rhizobium giardinii RepID=UPI00037E7AD1
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EJZ18009.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_21
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21832..22755
DNA (924bp) protein (308aa)
Putative Diguanylate kinase {ECO:0000313|EMBL:CCF20190.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCF20190.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
Putative Diguanylate kinase n=1 Tax=Rhizobium sp. RepID=L0NGK6_RHISP
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_22
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22893..23231)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Aeromonas caviae RepID=UPI0002197C45
Uncharacterized protein {ECO:0000313|EMBL:KGY76597.1}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_23
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23252..24028)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TRL3_PHAFV
Uncharacterized protein {ECO:0000313|EMBL:EPY01170.1}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_24
Aeromonas molluscorum, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24025..24555)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F0DCE
MarR family transcriptional regulator {ECO:0000313|EMBL:EOD55871.1}; TaxID=1268236 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas molluscorum 848.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2382_curated_25
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25253..25573
DNA (321bp) protein (107aa)
Ferredoxin n=1 Tax=Caulobacter crescentus OR37 RepID=R0D673_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:KGF69476.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
ferredoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_1000_bf_scaffold_2382_curated_26
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25603..26889
DNA (1287bp) protein (429aa)
Cytochrome P450 family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BYG7_HYPNA
Cytochrome P450 family protein {ECO:0000313|EMBL:CDX45331.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
cytochrome P450 family protein
SCNpilot_expt_1000_bf_scaffold_2382_curated_27
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27011..27547)
DNA (537bp) protein (179aa)
Transcriptional regulator, AraC family n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D5J3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGF69470.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
HTH-type transcriptional regulator
Displaying 27 items

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