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SCNpilot_expt_1000_bf_scaffold_3250_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3250_curated_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..682)
DNA (681bp) protein (227aa)
ribose/galactose/methyl galactoside import ATP-binding protein 2; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC-type sugar transport system, ATPase component n=1 Tax=Rhizobium sp. AP16 RepID=J2WYU8_9RHIZ
ABC-type sugar transport system, ATPase component {ECO:0000313|EMBL:EJK88298.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_3250_curated_2
unknown

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1036..1296
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3250_curated_3
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1247..2290
DNA (1044bp) protein (348aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CBS6_9RHIZ
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:EJN02489.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_1000_bf_scaffold_3250_curated_4
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2287..2520
DNA (234bp) protein (78aa)
UPI0003CFDABE related cluster n=1 Tax=unknown RepID=UPI0003CFDABE
AbrB family transcriptional regulator {ECO:0000313|EMBL:ESZ19251.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
AbrB/SpoV domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3250_curated_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2517..2921
DNA (405bp) protein (135aa)
UPI0003CF3ADF related cluster n=1 Tax=unknown RepID=UPI0003CF3ADF
DNA-binding protein {ECO:0000313|EMBL:ESW79225.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein; K07062
SCNpilot_expt_1000_bf_scaffold_3250_curated_6
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2918..3976)
DNA (1059bp) protein (353aa)
Oxidoreductase protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PTB6_9RHIZ
Oxidoreductase protein {ECO:0000313|EMBL:CCM77078.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
mocA; oxidoreductase
SCNpilot_expt_1000_bf_scaffold_3250_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4113..5066
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EA1C8
Uncharacterized protein {ECO:0000313|EMBL:EKS36340.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3250_curated_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5154..6062
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QX85_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX54751.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3250_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6241..7068
DNA (828bp) protein (276aa)
Putative DL-2-aminoadipic acid ABC transporter,periplasmic solute-binding component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNF7_9RHIZ
Putative DL-2-aminoadipic acid ABC transporter,periplasmic solute-binding component {ECO:0000313|EMBL:EYR82683.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fliY2; cystine-binding periplasmic protein FliY
SCNpilot_expt_1000_bf_scaffold_3250_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7150..8430
DNA (1281bp) protein (427aa)
Putative oxidoreductase OrdL {ECO:0000313|EMBL:EYR82684.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR82684.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative oxidoreductase OrdL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7K7_9RHIZ
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_3250_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8451..9422
DNA (972bp) protein (324aa)
Putative amino-acid transport system permease ABC transporter protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQD5_9RHIZ
Putative amino-acid transport system permease ABC transporter protein {ECO:0000313|EMBL:EYR82685.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3250_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9412..10299
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSY1_9RHIZ
Putative permease {ECO:0000313|EMBL:EYR82686.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3250_curated_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10303..10509)
DNA (207bp) protein (69aa)
kinase; K10710 fructoselysine 6-kinase [EC:2.7.1.-]
Putative kinase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KMM3_RHISN
Putative kinase {ECO:0000313|EMBL:ACP23638.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_3250_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10499..11077)
DNA (579bp) protein (193aa)
kinase; K10710 fructoselysine 6-kinase [EC:2.7.1.-]
Putative kinase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KMM3_RHISN
Putative kinase {ECO:0000313|EMBL:ACP23638.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_3250_curated_15
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11160..12173)
DNA (1014bp) protein (338aa)
Sugar isomerase (SIS) n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDE4_SINMW
Putative transport protein {ECO:0000313|EMBL:AHK47091.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
sugar isomerase (SIS)
SCNpilot_expt_1000_bf_scaffold_3250_curated_16
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12389..13120
DNA (732bp) protein (244aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXI1_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:AHK47092.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ymfC; HTH-type transcriptional regulator YmfC
Displaying 16 items

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