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SCNpilot_expt_1000_bf_scaffold_2313_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2313_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..455
DNA (453bp) protein (151aa)
60 kDa chaperonin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC70_9RHIZ
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
groEL; chaperonin GroEL
SCNpilot_expt_1000_bf_scaffold_2313_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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935..1378
DNA (444bp) protein (148aa)
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B7674D
DoxX family protein {ECO:0000313|EMBL:AJD40240.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein; K15977 putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2313_curated_3
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1452..2147)
DNA (696bp) protein (232aa)
ATP phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00046302}; EC=2.4.2.17 {ECO:0000256|SAAS:SAAS00046302};; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
ATP phosphoribosyltransferase n=1 Tax=Rhizobium giardinii RepID=UPI00035C7B0E
hisG; ATP phosphoribosyltransferase
SCNpilot_expt_1000_bf_scaffold_2313_curated_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2144..3265)
DNA (1122bp) protein (374aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U8N4_9RHIZ
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ATP phosphoribosyltransferase regulatory subunit
SCNpilot_expt_1000_bf_scaffold_2313_curated_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3334..4596)
DNA (1263bp) protein (421aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hisS; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase n=1 Tax=Rhizobium sp. CF142 RepID=J2B3Q7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2313_curated_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4593..4814)
DNA (222bp) protein (74aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
histidyl-tRNA synthase n=1 Tax=Rhizobium giardinii RepID=UPI00036A3593
SCNpilot_expt_1000_bf_scaffold_2313_curated_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5015..5821
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI0002DEF685
Uncharacterized protein {ECO:0000313|EMBL:EGE58184.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2313_curated_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5818..6522
DNA (705bp) protein (235aa)
Putative HAD superfamily hydrolase n=1 Tax=Rhizobium sp. CF142 RepID=J2B3Q2_9RHIZ
Putative HAD superfamily hydrolase {ECO:0000313|EMBL:EJJ30580.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
haloacid dehydrogenase hydrolase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_expt_1000_bf_scaffold_2313_curated_9
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6580..7011)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PDA0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM74561.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2313_curated_10
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7032..7661)
DNA (630bp) protein (210aa)
tag; DNA-3-methyladenine glycosylase I; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
3-methyladenine DNA glycosylase n=1 Tax=Rhizobium sp. CF122 RepID=J3BHI1_9RHIZ
3-methyladenine DNA glycosylase {ECO:0000313|EMBL:EJL51596.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_2313_curated_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7871..8647
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HRY6_9RHIZ
Putative exported ErfK/YbiS/YhnG family protein {ECO:0000313|EMBL:AHK43522.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2313_curated_12
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8764..9459
DNA (696bp) protein (232aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VZF4_9RHIZ
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EJZ20353.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_expt_1000_bf_scaffold_2313_curated_13
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9571..10071)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q1X8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF59155.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_2313_curated_14
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10155..11468)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1J0_9RHIZ
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
glcF-1; glycolate oxidase iron-sulfur subunit GlcF 1
SCNpilot_expt_1000_bf_scaffold_2313_curated_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11489..12685)
DNA (1197bp) protein (399aa)
FAD linked oxidase domain protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U8M3_9RHIZ
2-hydroxy-acid oxidase {ECO:0000313|EMBL:KGD86174.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
glycolate oxidase subunit E protein
SCNpilot_expt_1000_bf_scaffold_2313_curated_16
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12682..14121)
DNA (1440bp) protein (480aa)
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15); K00104 glycolate oxidase [EC:1.1.3.15]
FAD/FMN-dependent dehydrogenase n=1 Tax=Rhizobium sp. CF142 RepID=J1SSJ0_9RHIZ
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:EJJ28233.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_2313_curated_17
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14235..15131
DNA (897bp) protein (299aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J9W3_AGRRK
transcriptional regulator protein
Transcriptional regulator {ECO:0000313|EMBL:EJK80106.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_2313_curated_18
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15157..15687)
DNA (531bp) protein (177aa)
Acyltransferase family protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N4Y8_9RHIZ
Acyltransferase family protein {ECO:0000313|EMBL:EKF19263.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2313_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16476..17264
DNA (789bp) protein (263aa)
Regulator of the GntR family n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A156_RHIFH
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:AHK43514.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
regulator of the GntR family
SCNpilot_expt_1000_bf_scaffold_2313_curated_20
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17493..17975
DNA (483bp) protein (161aa)
NUDIX hydrolase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4T7C7_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:EJT02577.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_2313_curated_21
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18138..19046
DNA (909bp) protein (303aa)
Phosphate/sulfate permease n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K9F8_RHILT
Putative phosphate permease HP_1491 {ECO:0000313|EMBL:CDM56586.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
phosphate transporter; K03306 inorganic phosphate transporter, PiT family
SCNpilot_expt_1000_bf_scaffold_2313_curated_22
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19064..19630
DNA (567bp) protein (189aa)
Putative phosphate permease jhp_1384 n=1 Tax=Rhizobium sp. RepID=L0NB66_RHISP
Putative phosphate permease jhp_1384 {ECO:0000313|EMBL:CCF18119.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
phosphate ABC transporter permease; K03306 inorganic phosphate transporter, PiT family
SCNpilot_expt_1000_bf_scaffold_2313_curated_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19706..20443
DNA (738bp) protein (246aa)
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J9V8_AGRRK
SCNpilot_expt_1000_bf_scaffold_2313_curated_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20671..22044
DNA (1374bp) protein (458aa)
glutamate/cysteine ligase; K01919 glutamate--cysteine ligase [EC:6.3.2.2]
Glutamate--cysteine ligase, plant type n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H278_RHILT
Glutamate--cysteine ligase, plant type {ECO:0000313|EMBL:EJB04068.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_2313_curated_25
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22165..22989
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IM62_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE99818.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2313_curated_26
unknown

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comp(23119..23400)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2313_curated_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23600..23701
DNA (102bp) protein (34aa)
Transcriptional regulator, LysR family n=2 Tax=Agrobacterium RepID=F0L6T3_AGRSH
LysR family transcriptional regulator
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EHJ98437.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
Displaying 27 items

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