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SCNpilot_expt_1000_bf_scaffold_4909_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4909_curated_1
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..630)
DNA (630bp) protein (210aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XE52_NAKMY
periplasmic binding protein/LacI transcriptional regulator; K10439 ribose transport system substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_4909_curated_2
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1000..2046)
DNA (1047bp) protein (349aa)
aminoacyl-histidine dipeptidase (EC:3.4.13.3); K01270 dipeptidase D [EC:3.4.13.-]
Aminoacyl-histidine dipeptidase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XE56_NAKMY
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_4909_curated_3
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2043..2525)
DNA (483bp) protein (161aa)
pepD; aminoacyl-histidine dipeptidase (EC:3.4.13.3); K01270 dipeptidase D [EC:3.4.13.-]
Aminoacyl-histidine dipeptidase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MI69_RHISN
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_4909_curated_4

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comp(2785..3159)
DNA (375bp) protein (125aa)
Arabinose efflux permease family protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T9P6_9RHIZ
TetA {ECO:0000313|EMBL:AIA11844.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tetracycline efflux protein
SCNpilot_expt_1000_bf_scaffold_4909_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3418..4461
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037C6FB4
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYR83026.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter, substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4909_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4473..5603
DNA (1131bp) protein (377aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter, ATP-binding subunit (EC:3.6.3.31)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003794575
SCNpilot_expt_1000_bf_scaffold_4909_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5606..6853
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003711B6E
ABC-type spermidine/putrescine transport system permease component I {ECO:0000313|EMBL:EYR83024.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter permease protein
SCNpilot_expt_1000_bf_scaffold_4909_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6859..7668
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000366ACD6
ABC-type spermidine/putrescine transport system permease component II {ECO:0000313|EMBL:EYR83023.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter, permease
SCNpilot_expt_1000_bf_scaffold_4909_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7669..8289)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003681C36
HTH-type transcriptional regulator DgdR {ECO:0000313|EMBL:EYR83022.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LysR family
Displaying 9 items

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