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SCNpilot_expt_1000_bf_scaffold_983_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_983_curated_1
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..2193)
DNA (2193bp) protein (731aa)
Sporulation related domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJT0_RHITR
Sporulation domain-containing protein {ECO:0000313|EMBL:EUB95971.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
sporulation related domain-containing protein
SCNpilot_expt_1000_bf_scaffold_983_curated_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2254..4014)
DNA (1761bp) protein (587aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Arginine--tRNA ligase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LLL5_RHITR
argS; arginyl-tRNA synthetase
SCNpilot_expt_1000_bf_scaffold_983_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4080..5297)
DNA (1218bp) protein (406aa)
dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein (EC:3.1.5.1); K01129 dGTPase [EC:3.1.5.1]
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K6H7_RHILT
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_983_curated_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5518..5850
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U2U1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN86949.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
HesB family protein
SCNpilot_expt_1000_bf_scaffold_983_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5973..6758
DNA (786bp) protein (262aa)
exonuclease III; K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:KJX88253.1}; EC=3.1.11.2 {ECO:0000313|EMBL:KJX88253.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1A539
SCNpilot_expt_1000_bf_scaffold_983_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6774..7571)
DNA (798bp) protein (266aa)
TPR repeat-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0GZH9_RHILT
TPR repeat-containing protein {ECO:0000313|EMBL:EJB03023.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
Sel1 domain-containing protein repeat-containing protein; K07126
SCNpilot_expt_1000_bf_scaffold_983_curated_7
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8212..9363)
DNA (1152bp) protein (384aa)
Membrane protein involved in aromatic hydrocarbon degradation n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FBH9_9RHIZ
Membrane protein involved in aromatic hydrocarbon degradation {ECO:0000313|EMBL:EHS49825.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
fadL; long-chain fatty acid transport protein; K06076 long-chain fatty acid transport protein
SCNpilot_expt_1000_bf_scaffold_983_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9777..12704)
DNA (2928bp) protein (976aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQS0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_983_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12830..13753)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZME4_RHILW
hypothetical protein; K09991 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI54766.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_983_curated_10
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13937..15316)
DNA (1380bp) protein (460aa)
Type I secretion outer membrane protein, TolC family n=4 Tax=Rhizobium meliloti RepID=F6BME1_SINMB
TolC family type I secretion outer membrane protein; K12340 outer membrane channel protein
Putative outer membrane secretion protein {ECO:0000313|EMBL:CDH85403.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_983_curated_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15630..16280)
DNA (651bp) protein (217aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:EUB95980.1}; EC=2.1.1.77 {ECO:0000313|EMBL:EUB95980.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
protein-l-isoaspartate o-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate carboxylmethyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J2SI29_9RHIZ
SCNpilot_expt_1000_bf_scaffold_983_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17491..18453
DNA (963bp) protein (321aa)
Putative pentose monosaccharide ABC transporter,periplasmic solute-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNC8_9RHIZ
Putative pentose monosaccharide ABC transporter,periplasmic solute-binding protein {ECO:0000313|EMBL:EYR82577.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative sugar uptake ABC transporter periplasmic solute-binding protein
SCNpilot_expt_1000_bf_scaffold_983_curated_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18592..20109
DNA (1518bp) protein (506aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E3A5C
ABC-type sugar transport system, ATPase component {ECO:0000313|EMBL:EJC66350.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_983_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20106..21119
DNA (1014bp) protein (338aa)
sugar ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI0003614586
ABC transporter; K02057 simple sugar transport system permease protein
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR82575.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_983_curated_15
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21125..22087
DNA (963bp) protein (321aa)
sugar ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI00037DF05B
ABC transporter permease {ECO:0000313|EMBL:KDP75860.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
yjfF; inner membrane ABC transporter permease YjfF
SCNpilot_expt_1000_bf_scaffold_983_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22106..22864
DNA (759bp) protein (253aa)
GntR domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX40_9RHIZ
GntR domain-containing protein {ECO:0000313|EMBL:EYR79986.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_983_curated_17
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23036..23422)
DNA (387bp) protein (129aa)
fixI; nitrogen fixation protein FixI (EC:3.6.1.-)
Nitrogen fixation protein FixI n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003718F59
Nitrogen fixation protein FixI {ECO:0000313|EMBL:KEQ08105.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
SCNpilot_expt_1000_bf_scaffold_983_curated_18
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23400..25184)
DNA (1785bp) protein (595aa)
Cation transport ATPase nitrogen fixation protein FixI 1 n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SUL2_RHIET
Cation transport ATPase nitrogen fixation protein FixI 3 {ECO:0000313|EMBL:AJD46103.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
fixI-1; cation transport ATPase nitrogen fixation protein FixI 1
SCNpilot_expt_1000_bf_scaffold_983_curated_19
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25280..25543)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000374DF35
Putative integral membrane protein linked to a cation pump {ECO:0000313|EMBL:CDM60036.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
FixH family protein
SCNpilot_expt_1000_bf_scaffold_983_curated_20
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25550..25780)
DNA (231bp) protein (77aa)
Nitrogen fixation protein fixH n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PYD4_9RHIZ
Putative integral membrane protein linked to a cation pump {ECO:0000313|EMBL:CDM60036.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
FixH family protein
SCNpilot_expt_1000_bf_scaffold_983_curated_21
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25777..27360)
DNA (1584bp) protein (528aa)
Cbb3-type cytochrome-c oxidase accessory nitrogen fixation protein FixG 2 n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SVF7_RHIET
fixG-2; cbb3-type cytochrome-c oxidase accessory nitrogen fixation protein FixG 2
Cbb3-type cytochrome-c oxidase accessory nitrogen fixation protein FixG 2 {ECO:0000313|EMBL:AGS25887.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_983_curated_22
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27525..27794
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JFH4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC00885.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_983_curated_23
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27857..28720)
DNA (864bp) protein (288aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PQQ9_9RHIZ
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
fixP; putative cytochrome oxidase subunit; K00406 cytochrome c oxidase cbb3-type subunit III
SCNpilot_expt_1000_bf_scaffold_983_curated_24
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28723..28875)
DNA (153bp) protein (51aa)
Cbb3-type cytochrome oxidase, subunit 3 n=1 Tax=Rhizobium sp. CF122 RepID=J3BL68_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDM60040.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
fixQ-2; cbb3-type cytochrome-c oxidase subunit FixQ 2
SCNpilot_expt_1000_bf_scaffold_983_curated_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28888..29619)
DNA (732bp) protein (244aa)
Cbb3-type cytochrome-c oxidase subunit FixO 2 n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S732_RHIET
fixO-2; cbb3-type cytochrome-c oxidase subunit FixO 2
Cbb3-type cytochrome-c oxidase subunit FixO 2 {ECO:0000313|EMBL:AGS25883.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_983_curated_26
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29630..31129)
DNA (1500bp) protein (500aa)
Cbb3-type cytochrome-c oxidase subunit FixN 3 {ECO:0000313|EMBL:AJD46110.1}; EC=1.9.3.1 {ECO:0000313|EMBL:AJD46110.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Cytochrome c oxidase subunit 1 homolog n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PYD7_9RHIZ
fixN; cbb3-type cytochrome c oxidase subunit I
Displaying 26 items

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