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SCNpilot_expt_1000_bf_scaffold_9476_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9476_curated_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..610)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000380DB89
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:CDX35477.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
extracellular solute-binding protein family 1
SCNpilot_expt_1000_bf_scaffold_9476_curated_2
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(667..1020)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Pseudomonas putida RepID=UPI000373AEFE
Endoribonuclease l-psp {ECO:0000313|EMBL:EKX84657.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
endoribonuclease L-PSP family protein
SCNpilot_expt_1000_bf_scaffold_9476_curated_3
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1037..1885)
DNA (849bp) protein (283aa)
IclR family transcriptional regulator n=1 Tax=Pseudomonas putida CSV86 RepID=L1M150_PSEPU
IclR family transcriptional regulator {ECO:0000313|EMBL:EKX84659.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
transcriptional regulator family protein 29
SCNpilot_expt_1000_bf_scaffold_9476_curated_4
Pseudomonas sp. CF161, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1970..3151)
DNA (1182bp) protein (394aa)
Putative oxidoreductase n=1 Tax=Pseudomonas sp. CF161 RepID=S6IPJ7_9PSED
Putative oxidoreductase {ECO:0000313|EMBL:EPL05217.1}; TaxID=911241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CF161.;"
putative taurine dehydrogenase, large subunit
SCNpilot_expt_1000_bf_scaffold_9476_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3963..4151)
DNA (189bp) protein (63aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J3BSY4_9RHIZ
Strain MEJ076 contig_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ05497.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
BadM/Rrf2 family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_9476_curated_6
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4284..5204
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4NIW3_9CAUL
Thioredoxin reductase {ECO:0000313|EMBL:KEQ09794.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
Thioredoxin reductase
SCNpilot_expt_1000_bf_scaffold_9476_curated_7
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6053..7570
DNA (1518bp) protein (506aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXR9_9RHIZ
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIM28761.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
malonyl-CoA synthase
SCNpilot_expt_1000_bf_scaffold_9476_curated_8
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7570..8184
DNA (615bp) protein (205aa)
hpcE; 5-oxopent-3-ene-1,2,5-tricarboxylatedecarboxylas E (EC:5.3.3.-)
Probable D-threo-aldose 1-dehydrogenase n=1 Tax=Rhizobium loti RepID=M5AMJ9_RHILI
Aldo/keto reductase family protein {ECO:0000313|EMBL:AID28407.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_9476_curated_9
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8272..8451
DNA (180bp) protein (60aa)
betA; choline dehydrogenase; K00108 choline dehydrogenase [EC:1.1.99.1]
L-sorbose 1-dehydrogenase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YF12_9RHIZ
Alanine-phosphoribitol ligase {ECO:0000313|EMBL:ESZ69910.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
SCNpilot_expt_1000_bf_scaffold_9476_curated_10
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8895..10832
DNA (1938bp) protein (646aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:AEG09136.1}; EC=6.3.5.4 {ECO:0000313|EMBL:AEG09136.1};; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
Asparagine synthetase n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PN13_RHIML
asparagine synthase
SCNpilot_expt_1000_bf_scaffold_9476_curated_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10859..11134
DNA (276bp) protein (92aa)
Plasmid pSfHH103e complete sequence n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AFC6_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE99758.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_9476_curated_12
unknown

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11152..11232
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 12 items

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