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SCNpilot_expt_1000_bf_scaffold_2461_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2461_curated_1
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1139
DNA (1137bp) protein (379aa)
Putative sensor histidine kinase id=2549649 bin=GWF1_Rhodobacteraceae_65_7 species=Oligotropha carboxidovorans genus=Oligotropha taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
sensor histidine kinase
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_2461_curated_2
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1141..1821
DNA (681bp) protein (227aa)
Response regulator id=2549652 bin=GWF1_Rhodobacteraceae_65_7 species=Oligotropha carboxidovorans genus=Oligotropha taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
response regulator
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_2461_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1950..2432
DNA (483bp) protein (161aa)
Putative transcription elongation factor n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MGQ2_RHISN
transcription elongation factor regulatory protein
Putative transcription elongation factor {ECO:0000313|EMBL:ACP24167.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_4
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2571..3500
DNA (930bp) protein (310aa)
Putative uncharacterized protein myg1 n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JCY6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EGL64240.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
myg1; hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2461_curated_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3624..3914
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV76_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74591.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3972..4691)
DNA (720bp) protein (240aa)
cAMP-binding protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0JSU1_RHILV
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:AHF84932.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
Crp/Fnr family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2461_curated_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4907..6127
DNA (1221bp) protein (407aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase {ECO:0000313|EMBL:EUC00506.1}; EC=6.3.2.5 {ECO:0000313|EMBL:EUC00506.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=1 Tax=Rhizobium sp. CF080 RepID=J3BXW5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2461_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6124..6504
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B8S6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KDR87381.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2461_curated_9
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6485..7309)
DNA (825bp) protein (275aa)
glutamine amidotransferase n=1 Tax=Rhizobium giardinii RepID=UPI0003647AF5
glutamine amidotransferase; K07008 glutamine amidotransferase
Putative glutamine amidotransferase {ECO:0000313|EMBL:EJK78580.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_10
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7571..8191
DNA (621bp) protein (207aa)
glutathione S-transferase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B3911A
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AGB43316.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_11
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8266..8697
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4R8S2_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ87833.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2461_curated_12
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8705..9109
DNA (405bp) protein (135aa)
aldehyde-activating protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003614D15
glutathione-dependent formaldehyde-activating protein
Glutathione-dependent formaldehyde-activating GFA {ECO:0000313|EMBL:ABR62373.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9177..10103)
DNA (927bp) protein (309aa)
3-oxoadipyl-CoA thiolase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0GUW4_RHILT
3-oxoadipyl-CoA thiolase {ECO:0000313|EMBL:EJB01288.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
pcaF; beta-ketoadipyl CoA thiolase
SCNpilot_expt_1000_bf_scaffold_2461_curated_14
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10627..11292)
DNA (666bp) protein (222aa)
UPI0003CE58F1 related cluster n=1 Tax=unknown RepID=UPI0003CE58F1
Uncharacterized protein {ECO:0000313|EMBL:ESY93877.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11353..11571
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XXM3_RHIRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMS95357.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11649..12191)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U443_RHIRD
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CDN91968.1}; Flags: Precursor;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_17
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12380..13186)
DNA (807bp) protein (269aa)
Hydrolase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7F9_AGRRK
2-hydroxymuconic semialdehyde hydrolase {ECO:0000313|EMBL:KEA04915.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_2461_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13458..13907
DNA (450bp) protein (150aa)
Translation initiation factor IF-3 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F4L5_9RHIZ
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3
SCNpilot_expt_1000_bf_scaffold_2461_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14121..14324
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=5 Tax=Rhizobium/Agrobacterium group RepID=RL35_AGRRK
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_20
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14367..14771
DNA (405bp) protein (135aa)
50S ribosomal protein L20 n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=RL20_SINMW
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2461_curated_21
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14918..15784
DNA (867bp) protein (289aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Rhizobium sp. CF080 RepID=J3CUF3_9RHIZ
Displaying 21 items

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