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SCNpilot_cont_300_bf_scaffold_1_curated

Search features with annotation key words

Displaying items 1-30 of 608 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1_curated_1
unknown

Not on your lists

comp(3..284)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036F119B
SCNpilot_cont_300_bf_scaffold_1_curated_2
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(323..10324)
DNA (10002bp) protein (3334aa)
hypothetical protein, partial n=1 Tax=Spirosoma panaciterrae RepID=UPI00036B2A61
CnaB domain-containing protein
Cna B domain protein {ECO:0000313|EMBL:ABX04292.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCNpilot_cont_300_bf_scaffold_1_curated_3
unknown

Not on your lists

comp(10321..10716)
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1_curated_4
unknown

Not on your lists

comp(10851..11054)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1_curated_5
Flavobacteriales bacterium ALC-1, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11154..12710)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037719EF
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:EDP70587.1}; TaxID=391603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium ALC-1.;"
PDK repeat-containing protein
SCNpilot_cont_300_bf_scaffold_1_curated_6
unknown

Not on your lists

comp(13710..14537)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003621752
SCNpilot_cont_300_bf_scaffold_1_curated_7
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14911..15636)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003811392
Uncharacterized protein {ECO:0000313|EMBL:AKD54003.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
LytTR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1_curated_8
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15992..19159)
DNA (3168bp) protein (1056aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C5FCF
Uncharacterized protein {ECO:0000313|EMBL:AKD56935.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1_curated_9
unknown

Not on your lists

19875..20003
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1_curated_10
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20042..20737)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003697BF4
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEI49741.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_1_curated_11
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21131..23050)
DNA (1920bp) protein (640aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000362A6C9
histidine kinase
SCNpilot_cont_300_bf_scaffold_1_curated_12
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23199..25193)
DNA (1995bp) protein (665aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036EBAFB
histidine kinase
SCNpilot_cont_300_bf_scaffold_1_curated_13
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25773..26342
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036C8B8A
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB40403.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_1_curated_14
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26426..29722)
DNA (3297bp) protein (1099aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C5608
coagulation factor 5/8 type domain-containing protein
Coagulation factor 5/8 type domain protein {ECO:0000313|EMBL:ADB36422.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_1_curated_15
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29800..31806)
DNA (2007bp) protein (669aa)
xylan 1,4-beta-xylosidase (EC:3.2.1.37); K05349 beta-glucosidase [EC:3.2.1.21]
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:AEI46931.1}; EC=3.2.1.37 {ECO:0000313|EMBL:AEI46931.1};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
glycoside hydrolase n=1 Tax=Spirosoma panaciterrae RepID=UPI000381686A
SCNpilot_cont_300_bf_scaffold_1_curated_16
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31937..32836)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003647665
esterase
Esterase {ECO:0000313|EMBL:AEE48812.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_cont_300_bf_scaffold_1_curated_17
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(33106..34023)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036F150D
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADB37599.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_1_curated_18
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34103..34840)
DNA (738bp) protein (246aa)
(+)-neomenthol dehydrogenase {ECO:0000313|EMBL:CCH54740.1}; EC=1.1.1.208 {ECO:0000313|EMBL:CCH54740.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
short-chain dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003734506
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_1_curated_19
unknown

Not on your lists

comp(35029..35136)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1_curated_20
unknown

Not on your lists

comp(35213..35347)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1_curated_21
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(35534..36574)
DNA (1041bp) protein (347aa)
xylose isomerase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036B5DDB
xylose isomerase
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ADB39338.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_1_curated_22
unknown

Not on your lists

comp(36910..37200)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000378CE57
SCNpilot_cont_300_bf_scaffold_1_curated_23
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(37346..38110)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037EF1B2
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEI49891.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_1_curated_24
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(38107..39228)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036F0529
Histidine kinase {ECO:0000313|EMBL:AKD56028.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
signal transduction histidine kinase LytS
SCNpilot_cont_300_bf_scaffold_1_curated_25
unknown

Not on your lists

39789..40013
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003629A51
SCNpilot_cont_300_bf_scaffold_1_curated_26
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(40100..42154)
DNA (2055bp) protein (685aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003821AF9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU62778.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_300_bf_scaffold_1_curated_27
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

42372..43154
DNA (783bp) protein (261aa)
yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit (EC:1.-.-.-)
Xanthine dehydrogenase YagT iron-sulfur-binding subunit {ECO:0000313|EMBL:CCH02685.1}; EC=1.-.-.- {ECO:0000313|EMBL:CCH02685.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
ferredoxin n=1 Tax=Spirosoma panaciterrae RepID=UPI000371B0C7
SCNpilot_cont_300_bf_scaffold_1_curated_28
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

43172..44179
DNA (1008bp) protein (336aa)
xanthine dehydrogenase YagS FAD-binding subunit (EC:1.17.1.4)
FAD-binding molybdopterin dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036C7520
FAD-binding molybdopterin dehydrogenase {ECO:0000313|EMBL:AKD57033.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_1_curated_29
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

44268..46394
DNA (2127bp) protein (709aa)
xanthine dehydrogenase YagR molybdenum-binding subunit (EC:1.17.1.4)
Xanthine dehydrogenase YagR molybdenum-binding subunit {ECO:0000313|EMBL:CCH02687.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CCH02687.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
xanthine dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI000377CF95
SCNpilot_cont_300_bf_scaffold_1_curated_30
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(46422..46859)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI000370C750
Uncharacterized protein {ECO:0000313|EMBL:KIA86977.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
Displaying items 1-30 of 608 in total

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