ggKbase home page

SCNpilot_cont_300_bf_scaffold_455_curated

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_455_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..779
DNA (777bp) protein (259aa)
Putative AP endonuclease, family 2 n=1 Tax=Variovorax paradoxus B4 RepID=T1XIS7_VARPD
putative AP endonuclease, family 2
Putative AP endonuclease, family 2 {ECO:0000313|EMBL:AGU52468.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_455_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(785..1870)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYW1_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU40086.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_455_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1956..3413)
DNA (1458bp) protein (486aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000375675B
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
Transcriptional regulator with HTH domain and aminotransferase domain containing protein {ECO:0000313|EMBL:EJL79680.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_455_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3499..4740
DNA (1242bp) protein (414aa)
Putative transporter, MFS-type n=1 Tax=Variovorax paradoxus B4 RepID=T1XK08_VARPD
putative transporter, MFS-type
Putative transporter, MFS-type {ECO:0000313|EMBL:AGU52470.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_455_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5104..5352
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYW4_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU40089.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_455_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5411..5683
DNA (273bp) protein (91aa)
Translation initiation factor IF-1 n=2 Tax=Variovorax paradoxus RepID=C5CRD7_VARPS
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_455_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5768..7198
DNA (1431bp) protein (477aa)
dead/deah box helicase domain-containing protein; K05591 ATP-independent RNA helicase DbpA [EC:3.6.4.13]
DNA/RNA helicase, superfamily II n=1 Tax=Variovorax sp. CF313 RepID=J3CWI5_9BURK
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:EJL79676.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_455_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7173..8627)
DNA (1455bp) protein (485aa)
multidrug transporter n=1 Tax=Variovorax paradoxus RepID=UPI000361E0AD
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35772.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
multi antimicrobial extrusion protein mate
SCNpilot_cont_300_bf_scaffold_455_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8687..8857
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CW33_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79674.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_455_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8951..9271
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XK12_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU52475.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_455_curated_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9291..10178)
DNA (888bp) protein (296aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2TM64_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL79672.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_455_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10270..11238
DNA (969bp) protein (323aa)
Putative permease, DMT superfamily n=1 Tax=Variovorax sp. CF313 RepID=J3CWI2_9BURK
Putative permease, DMT superfamily {ECO:0000313|EMBL:EJL79671.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K15269 probable blue pigment (indigoidine) exporter
SCNpilot_cont_300_bf_scaffold_455_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11407..12105)
DNA (699bp) protein (233aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CW30_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL79669.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_455_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12102..13406)
DNA (1305bp) protein (435aa)
NAD(FAD)-dependent dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2L373_9BURK
NAD(FAD)-dependent dehydrogenase {ECO:0000313|EMBL:EJL79668.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
SCNpilot_cont_300_bf_scaffold_455_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13403..13657)
DNA (255bp) protein (85aa)
Ferredoxin n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZZ0_VARPE
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ADU40099.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_455_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13654..14757)
DNA (1104bp) protein (368aa)
FAD dependent oxidoreductase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZZ1_VARPE
fad dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADU40100.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_455_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14769..15704)
DNA (936bp) protein (312aa)
4-hydroxyproline epimerase (EC:5.1.1.8); K12658 4-hydroxyproline epimerase [EC:5.1.1.8]
Proline racemase n=1 Tax=Variovorax sp. CF313 RepID=J2KHJ7_9BURK
Proline racemase {ECO:0000313|EMBL:EJL79665.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_455_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15719..16861)
DNA (1143bp) protein (381aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036342A3
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL79664.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
extracellular ligand-binding receptor
SCNpilot_cont_300_bf_scaffold_455_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16913..17827)
DNA (915bp) protein (305aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
dihydrodipicolinate synthase n=1 Tax=Variovorax paradoxus RepID=UPI00036B72E0
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EJL79663.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_455_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17974..18711)
DNA (738bp) protein (246aa)
Surface antigen family protein n=1 Tax=Variovorax sp. CF313 RepID=J2TM55_9BURK
Surface antigen family protein {ECO:0000313|EMBL:EJL79662.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
17 kDa surface antigen
SCNpilot_cont_300_bf_scaffold_455_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18800..20125)
DNA (1326bp) protein (442aa)
hipa n-terminal domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
HipA domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWH7_9BURK
HipA domain-containing protein {ECO:0000313|EMBL:EJL79661.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_455_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20122..20583)
DNA (462bp) protein (154aa)
Putative transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KHJ4_9BURK
Putative transcriptional regulator {ECO:0000313|EMBL:EJL79660.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
XRE family transcriptional regulator; K15773 HTH-type transcriptional regulator, antitoxin HipB
SCNpilot_cont_300_bf_scaffold_455_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20707..21711)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CW24_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79659.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative Bug-like extracytoplasmic solute binding receptor, TTT family
SCNpilot_cont_300_bf_scaffold_455_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21728..22930)
DNA (1203bp) protein (401aa)
amidohydrolase (EC:3.5.1.32)
Amidohydrolase {ECO:0000313|EMBL:ADU40107.1}; EC=3.5.1.32 {ECO:0000313|EMBL:ADU40107.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Amidohydrolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZZ8_VARPE
SCNpilot_cont_300_bf_scaffold_455_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23011..23865)
DNA (855bp) protein (285aa)
Pirin-related protein n=1 Tax=Variovorax sp. CF313 RepID=J2KHI1_9BURK
Pirin-related protein {ECO:0000313|EMBL:EJL79645.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pirin domain-containing protein
SCNpilot_cont_300_bf_scaffold_455_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23862..24449)
DNA (588bp) protein (196aa)
NADPH-dependent FMN reductase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V000_VARPE
nadph-dependent fmn reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ADU40109.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_455_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24497..24877)
DNA (381bp) protein (127aa)
DoxX family protein n=1 Tax=Variovorax paradoxus RepID=UPI0003614291
DoxX protein {ECO:0000313|EMBL:EJL79644.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DoxX family protein
SCNpilot_cont_300_bf_scaffold_455_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24954..25898
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000371B567
Transcriptional regulator {ECO:0000313|EMBL:EJL79643.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_455_curated_29
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26073..27836
DNA (1764bp) protein (588aa)
Nerd domain protein id=1267953 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_cont_300_bf_scaffold_455_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27922..28398
DNA (477bp) protein (159aa)
FKBP-type peptidylprolyl isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Variovorax sp. CF313 RepID=J2TM38_9BURK
Displaying items 1-30 of 47 in total

View Taxonomy