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SCNpilot_cont_300_bf_scaffold_1121_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1121_curated_1
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(508..1653)
DNA (1146bp) protein (382aa)
ferredoxin n=1 Tax=Amorphus coralli RepID=UPI000381CD2E
Uncharacterized protein {ECO:0000313|EMBL:KEJ93902.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
phenylacetate-CoA oxygenase/reductase subunit PaaK; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
SCNpilot_cont_300_bf_scaffold_1121_curated_2
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1696..2208)
DNA (513bp) protein (171aa)
Phenylacetate-CoA oxygenase, PaaJ subunit n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T299_9BURK
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:KEJ93901.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
phenylacetate-CoA oxygenase subunit PaaJ; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
SCNpilot_cont_300_bf_scaffold_1121_curated_3
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2202..2963)
DNA (762bp) protein (254aa)
phenylacetate-CoA oxygenase subunit PaaI; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
Phenylacetate-CoA oxygenase, PaaI subunit n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VJ57_RHOPX
Phenylacetic acid degradation protein {ECO:0000313|EMBL:KEJ93900.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
SCNpilot_cont_300_bf_scaffold_1121_curated_4
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2963..3256)
DNA (294bp) protein (98aa)
phenylacetate-CoA oxygenase subunit PaaB n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B75557
Phenylacetate-CoA oxygenase {ECO:0000313|EMBL:KEJ93899.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
phenylacetate-CoA oxygenase subunit PaaB; K02610 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
SCNpilot_cont_300_bf_scaffold_1121_curated_5
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3272..4261)
DNA (990bp) protein (330aa)
Phenylacetate-CoA oxygenase subunit PaaA n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LSN4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEJ93898.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
paaA; phenylacetate-CoA oxygenase subunit PaaA
SCNpilot_cont_300_bf_scaffold_1121_curated_6
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4444..5169)
DNA (726bp) protein (242aa)
High-affinity branched-chain amino acid transport, ATP-binding protein n=38 Tax=Bordetella RepID=F4LA28_BORPC
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEJ93897.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
livF; high-affinity branched-chain amino acid transport ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1121_curated_7
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5166..5930)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PE14_9BRAD
Leucine/isoleucine/valine transporter ATP-binding subunit {ECO:0000313|EMBL:KEJ93896.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
branched-chain amino acid ABC transport system ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_cont_300_bf_scaffold_1121_curated_8
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5914..6882)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036B0B63
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KEJ93895.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_300_bf_scaffold_1121_curated_9
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6875..7747)
DNA (873bp) protein (291aa)
ABC transporter permease n=1 Tax=Amorphus coralli RepID=UPI00035DF61D
ABC transporter permease {ECO:0000313|EMBL:KEJ93894.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
high-affinity branched-chain amino acid transport system, permease protein
SCNpilot_cont_300_bf_scaffold_1121_curated_10
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7779..8918)
DNA (1140bp) protein (380aa)
Extracellular ligand-binding receptor n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDQ1_XANP2
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEJ93893.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1121_curated_11
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8986..9420)
DNA (435bp) protein (145aa)
phenylacetic acid degradation protein PaaD (EC:3.1.2.23)
Phenylacetic acid degradation protein PaaD n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XSY1_PARAH
Uncharacterized protein {ECO:0000313|EMBL:KEJ93892.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
SCNpilot_cont_300_bf_scaffold_1121_curated_12
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9417..10214)
DNA (798bp) protein (266aa)
enoyl-CoA hydratase (EC:4.2.1.17); K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI000371C90F
Enoyl-CoA hydratase {ECO:0000313|EMBL:KEJ93891.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
SCNpilot_cont_300_bf_scaffold_1121_curated_13
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10410..11381
DNA (972bp) protein (324aa)
Phenylacetate-responsive transcriptional repressor n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z5P0_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:KEJ93890.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
paaX; phenylacetate-responsive transcriptional repressor; K02616 phenylacetic acid degradation operon negative regulatory protein
SCNpilot_cont_300_bf_scaffold_1121_curated_14
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11424..12116)
DNA (693bp) protein (231aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Pseudomonas sp. GM21 RepID=J3EWZ0_9PSED
Uncharacterized protein {ECO:0000313|EMBL:KEJ93887.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
epoxide hydrolase, eukaryotic-like protein
SCNpilot_cont_300_bf_scaffold_1121_curated_15
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12554..13039)
DNA (486bp) protein (162aa)
UPI0003C7DDF4 related cluster n=1 Tax=unknown RepID=UPI0003C7DDF4
Uncharacterized protein {ECO:0000313|EMBL:KEJ93888.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
MaoC domain-containing protein dehydratase
SCNpilot_cont_300_bf_scaffold_1121_curated_16
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13041..14609)
DNA (1569bp) protein (523aa)
UPI0003C7F239 related cluster n=1 Tax=unknown RepID=UPI0003C7F239
Uncharacterized protein {ECO:0000313|EMBL:KEJ93889.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
acyl-CoA synthetase
SCNpilot_cont_300_bf_scaffold_1121_curated_17
Mycobacterium llatzerense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15190..15492
DNA (303bp) protein (101aa)
Mycobacterium llatzerense strain CLUC14 Mllat_contig000012, whole genome shotgun sequence {ECO:0000313|EMBL:KIU17038.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KIU17038.1};; TaxID=280871 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium llatzerense.;"
short chain enoyl-CoA hydratase (EC:4.2.1.17); K01692 enoyl-CoA hydratase [EC:4.2.1.17]
enoyl-CoA hydratase n=1 Tax=Mycobacterium sp. 360MFTsu5.1 RepID=UPI000381B7A9
SCNpilot_cont_300_bf_scaffold_1121_curated_18
Pseudomonas sp. EGD-AK9, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15556..16740)
DNA (1185bp) protein (395aa)
beta-ketothiolase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA028 RepID=U8MJE1_PSEAI
3-ketoacyl-CoA thiolase {ECO:0000313|EMBL:ERI50815.1}; TaxID=1386078 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. EGD-AK9.;"
Displaying 18 items

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