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SCNpilot_cont_300_bf_scaffold_57_curated

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Displaying items 1-30 of 234 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_57_curated_1
unknown

Not on your lists

comp(1..81)
DNA (81bp) protein (27aa)
NAD(P) transhydrogenase subunit alpha n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Y0_VARPS
SCNpilot_cont_300_bf_scaffold_57_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

525..1241
DNA (717bp) protein (239aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3E8_VARPE
Variovorax paradoxus strain MEDvA23 contig_67, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25629.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
winged helix family two component transcriptional regulator
SCNpilot_cont_300_bf_scaffold_57_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1318..1743
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KHX0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79800.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_57_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1774..2265
DNA (492bp) protein (164aa)
ADP-ribose pyrophosphatase n=1 Tax=Variovorax sp. CF313 RepID=J3CWQ0_9BURK
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EJL79801.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nudix hydrolase
SCNpilot_cont_300_bf_scaffold_57_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2267..3376)
DNA (1110bp) protein (370aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.8.1.-)
thiouridylase n=1 Tax=Variovorax paradoxus RepID=UPI0003767101
SCNpilot_cont_300_bf_scaffold_57_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3521..5248
DNA (1728bp) protein (576aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Variovorax sp. CF313 RepID=J2L3I0_9BURK
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EJL79803.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
AMP-dependent synthetase and ligase
SCNpilot_cont_300_bf_scaffold_57_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5262..6260)
DNA (999bp) protein (333aa)
Luciferase family oxidoreductase, group 1 n=1 Tax=Variovorax sp. CF313 RepID=J3CWA1_9BURK
Luciferase family oxidoreductase, group 1 {ECO:0000313|EMBL:EJL79804.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
luciferase family oxidoreductase, group 1
SCNpilot_cont_300_bf_scaffold_57_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6305..7987)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3E3_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34633.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_57_curated_9
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8036..8635)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000361ADC5
Strain MEJ086 contig_63, whole genome shotgun sequence {ECO:0000313|EMBL:KIP96330.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_57_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8649..10475)
DNA (1827bp) protein (609aa)
VanW family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3E2_VARPE
vanw family protein
VanW family protein {ECO:0000313|EMBL:ADU34632.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_57_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10448..11053)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KHX4_9BURK
Variovorax paradoxus strain MEDvA23 contig_67, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25623.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_57_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11270..11929
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3E0_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34630.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_57_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11940..12617)
DNA (678bp) protein (226aa)
Nicotinamidase-like amidase n=1 Tax=Burkholderia sp. BT03 RepID=J2HM43_9BURK
Variovorax paradoxus strain MEDvA23 contig_67, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25622.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
isochorismatase hydrolase
SCNpilot_cont_300_bf_scaffold_57_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12670..13050)
DNA (381bp) protein (127aa)
helicase SNF2 n=1 Tax=Variovorax paradoxus RepID=UPI00036F30F5
snf2 superfamily protein
SNF2 superfamily protein {ECO:0000313|EMBL:ADU34629.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_57_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13236..13727
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2L3I5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79808.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_57_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13734..14324)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWA3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL79809.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
bioy protein; K03523 putative biotin biosynthesis protein BioY
SCNpilot_cont_300_bf_scaffold_57_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14365..14958)
DNA (594bp) protein (198aa)
ABC-type cobalt transport system, permease component CbiQ n=1 Tax=Variovorax sp. CF313 RepID=J2KHX8_9BURK
ABC-type cobalt transport system, permease component CbiQ {ECO:0000313|EMBL:EJL79810.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cobalt transport protein; K02008 cobalt/nickel transport system permease protein
SCNpilot_cont_300_bf_scaffold_57_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14951..15670)
DNA (720bp) protein (240aa)
ABC-type cobalt transport system, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J3CWQ5_9BURK
ABC-type cobalt transport system, ATPase component {ECO:0000313|EMBL:EJL79811.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter; K02006 cobalt/nickel transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_57_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15740..16582)
DNA (843bp) protein (281aa)
phosphonomutase n=1 Tax=Variovorax paradoxus RepID=UPI000365F361
PEP phosphonomutase-like enzyme {ECO:0000313|EMBL:EJL79812.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pep phosphonomutase and related enzymes-like protein
SCNpilot_cont_300_bf_scaffold_57_curated_20
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16656..17951)
DNA (1296bp) protein (432aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000363F1DF
MFS permease; K03762 MFS transporter, MHS family, proline/betaine transporter
Probable MFS permease {ECO:0000313|EMBL:CAP45237.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_300_bf_scaffold_57_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17948..20290)
DNA (2343bp) protein (781aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035FC492
Uncharacterized protein {ECO:0000313|EMBL:EJL71352.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_57_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20287..21699)
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00038212BF
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:EJL71354.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
class III aminotransferase
SCNpilot_cont_300_bf_scaffold_57_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21803..22720
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000371AB51
Transcriptional regulator {ECO:0000313|EMBL:EJL71355.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_57_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22704..24437)
DNA (1734bp) protein (578aa)
Zinc carboxypeptidase n=1 Tax=Variovorax sp. CF313 RepID=J2L3I9_9BURK
Zinc carboxypeptidase {ECO:0000313|EMBL:EJL79813.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
peptidase, family M14
SCNpilot_cont_300_bf_scaffold_57_curated_25
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24451..25260)
DNA (810bp) protein (270aa)
ABC transporter n=1 Tax=Paracoccus sp. N5 RepID=UPI00037D8E67
ABC transporter; K02032 peptide/nickel transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ABL69357.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_300_bf_scaffold_57_curated_26
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25250..26098)
DNA (849bp) protein (283aa)
ABC transporter related n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=B9KMD6_RHOSK
ABC transporter; K02031 peptide/nickel transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACM02027.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
SCNpilot_cont_300_bf_scaffold_57_curated_27
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26091..26987)
DNA (897bp) protein (299aa)
cytochrome C550 n=1 Tax=Oceanicola sp. S124 RepID=UPI0002558172
D-ala-D-ala transporter subunit {ECO:0000313|EMBL:KKB85141.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
D,D-dipeptide transport system permease protein
SCNpilot_cont_300_bf_scaffold_57_curated_28
Paracoccus sphaerophysae, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26984..28006)
DNA (1023bp) protein (341aa)
Dipeptide transport system permease protein DppB n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RAN4_9RHIZ
Peptide ABC transporter permease {ECO:0000313|EMBL:KGJ07072.1}; TaxID=690417 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sphaerophysae.;"
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
SCNpilot_cont_300_bf_scaffold_57_curated_29
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28017..29591)
DNA (1575bp) protein (525aa)
Extracellular solute-binding protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C0V9_9RHIZ
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM34718.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
dppA; periplasmic dipeptide transport protein DppA
SCNpilot_cont_300_bf_scaffold_57_curated_30
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29647..30117)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs1 RepID=S6GG39_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGJ20956.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
GAF sensor protein
Displaying items 1-30 of 234 in total

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