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SCNpilot_cont_300_bf_scaffold_84_curated

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Displaying items 1-30 of 197 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_84_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..96
DNA (96bp) protein (32aa)
transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003818C65
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36208.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
outer membrane autotransporter barrel domain-containing protein
SCNpilot_cont_300_bf_scaffold_84_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(176..1486)
DNA (1311bp) protein (437aa)
gltA; citrate synthase GltA (EC:2.3.3.1)
Citrate synthase n=1 Tax=Variovorax paradoxus B4 RepID=T1X911_VARPD
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_84_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1511..1825)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KYX7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL78203.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K09159 hypothetical protein
SCNpilot_cont_300_bf_scaffold_84_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1855..2556)
DNA (702bp) protein (234aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Variovorax sp. CF313 RepID=J3CTI9_9BURK
SCNpilot_cont_300_bf_scaffold_84_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2573..4381)
DNA (1809bp) protein (603aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
succinate dehydrogenase, flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase flavoprotein subunit n=1 Tax=Variovorax paradoxus RepID=UPI0003707DBD
SCNpilot_cont_300_bf_scaffold_84_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4389..4754)
DNA (366bp) protein (122aa)
Succinate dehydrogenase, hydrophobic membrane anchor protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3K4_VARPE
Variovorax paradoxus strain MEDvA23 contig_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34538.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
succinate dehydrogenase, hydrophobic membrane anchor protein; K00242 succinate dehydrogenase membrane anchor subunit
SCNpilot_cont_300_bf_scaffold_84_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4768..5214)
DNA (447bp) protein (149aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Variovorax sp. CF313 RepID=J2TI53_9BURK
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:EJL78207.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
succinate dehydrogenase, cytochrome b556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_cont_300_bf_scaffold_84_curated_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5441..6199)
DNA (759bp) protein (253aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KYY1_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL78208.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_84_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6384..7370
DNA (987bp) protein (329aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_01517, ECO:0000256|SAAS:SAAS00060476};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37]
Malate dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3K7_VARPE
SCNpilot_cont_300_bf_scaffold_84_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7383..8174
DNA (792bp) protein (264aa)
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
trans-aconitate 2-methyltransferase (EC:2.1.1.144); K00598 trans-aconitate 2-methyltransferase [EC:2.1.1.144]
trans-aconitate 2-methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003796BAE
SCNpilot_cont_300_bf_scaffold_84_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8171..9172
DNA (1002bp) protein (334aa)
Putative citrate lyase n=1 Tax=Variovorax paradoxus B4 RepID=T1X8K8_VARPD
putative citrate lyase
Putative citrate lyase {ECO:0000313|EMBL:AGU48639.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_84_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9207..9779
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TI57_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL78212.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_84_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9860..12445
DNA (2586bp) protein (862aa)
Aconitate hydratase B {ECO:0000256|PIRNR:PIRNR036687}; EC=4.2.1.3 {ECO:0000256|PIRNR:PIRNR036687};; EC=4.2.1.99 {ECO:0000256|PIRNR:PIRNR036687};; 2-methylisocitrate dehydratase {ECO:0000256|PIRNR:PIRNR036687}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
aconitate hydratase 2; K01682 aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
Aconitate hydratase 2 n=1 Tax=Variovorax sp. CF313 RepID=J2KYY4_9BURK
SCNpilot_cont_300_bf_scaffold_84_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12616..14895
DNA (2280bp) protein (760aa)
acyL-CoA dehydrogenase domain-containing protein; K06445 acyl-CoA dehydrogenase [EC:1.3.99.-]
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3M0_VARPE
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADU35800.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_84_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14780..15646)
DNA (867bp) protein (289aa)
Helix-turn-helix domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3M1_VARPE
XRE family transcriptional regulator
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADU35801.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_84_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15767..16180
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3M2_VARPE
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17869.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_84_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16296..19163
DNA (2868bp) protein (956aa)
AcnA protein {ECO:0000313|EMBL:KIQ17868.1}; EC=4.2.1.3 {ECO:0000313|EMBL:KIQ17868.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
aconitate hydratase 1; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase 1 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3M3_VARPE
SCNpilot_cont_300_bf_scaffold_84_curated_18
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19181..20644)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12EZ3_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE42899.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_cont_300_bf_scaffold_84_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20716..21177
DNA (462bp) protein (154aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Phosphoesterase, MJ0936 family n=1 Tax=Variovorax sp. CF313 RepID=J3CRT2_9BURK
phosphodiesterase; K07095
SCNpilot_cont_300_bf_scaffold_84_curated_20
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21334..22170
DNA (837bp) protein (279aa)
iron transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036D46CD
FTR1 family protein {ECO:0000313|EMBL:EFV95253.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
iron permease FTR1; K07243 high-affinity iron transporter
SCNpilot_cont_300_bf_scaffold_84_curated_21
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22179..23369
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003649033
Imelysin {ECO:0000313|EMBL:EFV95252.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_84_curated_22
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23389..24714
DNA (1326bp) protein (442aa)
Tat-translocated enzyme; K15733 dye decolorizing peroxidase [EC:1.11.1.19]
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000366DA00
Tat-translocated enzyme {ECO:0000313|EMBL:EFV95251.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_cont_300_bf_scaffold_84_curated_23
Sphingomonas sp. A1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24767..25603
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036E97C0
Alginate-binding protein {ECO:0000313|EMBL:BAE87076.1}; TaxID=90322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. A1.;"
hypothetical protein; K07224 putative lipoprotein
SCNpilot_cont_300_bf_scaffold_84_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25751..26050
DNA (300bp) protein (100aa)
iron transporter FeoA n=1 Tax=Variovorax paradoxus RepID=UPI0003653B1D
Fe2+ transport system protein A {ECO:0000313|EMBL:EJL77208.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
feoa family protein; K04758 ferrous iron transport protein A
SCNpilot_cont_300_bf_scaffold_84_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26043..27938
DNA (1896bp) protein (632aa)
Fe2+ transport system protein B n=1 Tax=Variovorax sp. CF313 RepID=J2TFR1_9BURK
Fe2+ transport system protein B {ECO:0000313|EMBL:EJL77207.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
feoB; ferrous iron transport protein B
SCNpilot_cont_300_bf_scaffold_84_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27968..28270
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CSA5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL77206.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_84_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28275..29459
DNA (1185bp) protein (395aa)
salicylate 1-monooxygenase (EC:1.14.13.1); K00480 salicylate hydroxylase [EC:1.14.13.1]
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase n=1 Tax=Variovorax sp. CF313 RepID=J2KAC9_9BURK
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:EJL77205.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_84_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29470..30720)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003692F61
Uncharacterized protein {ECO:0000313|EMBL:EJL77204.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_84_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30821..31681)
DNA (861bp) protein (287aa)
tryptophan 2,3-dioxygenase; K00453 tryptophan 2,3-dioxygenase [EC:1.13.11.11]
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovora
Tryptophan 2,3-dioxygenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3N1_VARPE
SCNpilot_cont_300_bf_scaffold_84_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31678..33009)
DNA (1332bp) protein (444aa)
Kynureninase {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800}; EC=3.7.1.3 {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800};; L-kynurenine hydrolase {ECO:0000256|HAMAP-Rule:MF_01970}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
kynureninase; K01556 kynureninase [EC:3.7.1.3]
Kynureninase n=1 Tax=Variovorax sp. CF313 RepID=J3CSA3_9BURK
Displaying items 1-30 of 197 in total

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