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SCNpilot_cont_300_bf_scaffold_84_curated

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Displaying items 61-90 of 197 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_84_curated_61
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57588..58307
DNA (720bp) protein (240aa)
NUDIX hydrolase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CSN0_VARPS
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ACS18128.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_84_curated_62
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58360..59361
DNA (1002bp) protein (334aa)
cobalamin biosynthesis protein cbib; K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
Cobalamin biosynthesis protein CobD n=1 Tax=Variovorax sp. CF313 RepID=J2KA99_9BURK
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_84_curated_63
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59387..60481
DNA (1095bp) protein (365aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hisC2; histidinol-phosphate aminotransferase HisC (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CRQ8_9BURK
SCNpilot_cont_300_bf_scaffold_84_curated_64
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60478..61521
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KVZ3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL77168.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_84_curated_65
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61528..62325)
DNA (798bp) protein (266aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ribosome small subunit-dependent GTPase a; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Variovorax sp. CF313 RepID=J2TFM1_9BURK
SCNpilot_cont_300_bf_scaffold_84_curated_66
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62500..62859)
DNA (360bp) protein (120aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J3CS82_9BURK
SCNpilot_cont_300_bf_scaffold_84_curated_67
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62890..64149)
DNA (1260bp) protein (420aa)
ste24 endopeptidase (EC:3.4.24.84); K06013 STE24 endopeptidase [EC:3.4.24.84]
Zn-dependent protease with chaperone function n=1 Tax=Variovorax sp. CF313 RepID=J2KA95_9BURK
Zn-dependent protease with chaperone function {ECO:0000313|EMBL:EJL77165.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_84_curated_68
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64210..64806
DNA (597bp) protein (199aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
exonuclease rnase t and DNA polymerase iii; K13288 oligoribonuclease [EC:3.1.-.-]
oligoribonuclease n=1 Tax=Variovorax paradoxus RepID=UPI00037B37BB
SCNpilot_cont_300_bf_scaffold_84_curated_69
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65055..66938
DNA (1884bp) protein (628aa)
DNA/RNA helicase, superfamily II n=1 Tax=Variovorax sp. CF313 RepID=J2KVY9_9BURK
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:EJL77163.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DEAD/DEAH box helicase domain-containing protein
SCNpilot_cont_300_bf_scaffold_84_curated_70
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67152..68225
DNA (1074bp) protein (358aa)
opine dehydrogenase (EC:1.5.1.28)
Glycerol-3-phosphate dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2TFL6_9BURK
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:EJL77162.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_84_curated_71
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68215..69219
DNA (1005bp) protein (335aa)
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17824.1}; EC=1.1.1.157 {ECO:0000313|EMBL:KIQ17824.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J3CS80_9BURK
putative 3-hydroxybutyryl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_84_curated_72
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69216..70019
DNA (804bp) protein (268aa)
Alpha/beta hydrolase fold protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4L2_VARPE
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17823.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_84_curated_73
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70016..70900
DNA (885bp) protein (295aa)
nadph:quinone reductase (EC:1.6.5.5); K00344 NADPH2:quinone reductase [EC:1.6.5.5]
Zn-dependent oxidoreductase, NADPH:quinone reductase n=1 Tax=Variovorax sp. CF313 RepID=J3CRQ3_9BURK
Zn-dependent oxidoreductase, NADPH:quinone reductase {ECO:0000313|EMBL:EJL77159.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_84_curated_74
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70942..71418)
DNA (477bp) protein (159aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KVY4_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL77158.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, MarR family
SCNpilot_cont_300_bf_scaffold_84_curated_75
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71563..73755
DNA (2193bp) protein (731aa)
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:ACS18141.1}; EC=1.2.7.8 {ECO:0000313|EMBL:ACS18141.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K00179 indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CSP3_VARPS
SCNpilot_cont_300_bf_scaffold_84_curated_76
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73760..75265
DNA (1506bp) protein (502aa)
indolepyruvate oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI000372515B
2-oxoacid:ferredoxin oxidoreductase, gamma subunit {ECO:0000313|EMBL:EJL77156.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative indolepyruvate oxidoreductase, subunit beta
SCNpilot_cont_300_bf_scaffold_84_curated_77
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75279..76271
DNA (993bp) protein (331aa)
ferredoxin; K03863 vanillate monooxygenase [EC:1.14.13.82]
vanillate O-demethylase n=1 Tax=Variovorax paradoxus RepID=UPI000371482C
Ferredoxin {ECO:0000313|EMBL:ACS18143.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_84_curated_78
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76292..77605
DNA (1314bp) protein (438aa)
oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00036B4AED
rieske (2fe-2S) iron-sulfur domain
Rieske (2Fe-2S) iron-sulfur domain {ECO:0000313|EMBL:ADU35859.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_84_curated_79
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77605..78096
DNA (492bp) protein (164aa)
Small subunit of phenylpropionate dioxygenase n=1 Tax=Variovorax sp. CF313 RepID=J2KVX9_9BURK
Small subunit of phenylpropionate dioxygenase {ECO:0000313|EMBL:EJL77153.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative benzoate 1,2-dioxygenase, subunit beta
SCNpilot_cont_300_bf_scaffold_84_curated_80
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78111..79739
DNA (1629bp) protein (543aa)
crotonobetaine/carnitine-CoA ligase n=1 Tax=Variovorax paradoxus RepID=UPI000362C14D
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17816.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative CoA-ligase
SCNpilot_cont_300_bf_scaffold_84_curated_81
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79736..80911
DNA (1176bp) protein (392aa)
thiolase n=1 Tax=Variovorax paradoxus RepID=UPI0003600829
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EJL77151.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_84_curated_82
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80908..82161
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KA82_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL77150.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative oxidoreductase, SDR family
SCNpilot_cont_300_bf_scaffold_84_curated_83
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82178..82990
DNA (813bp) protein (271aa)
cyclase n=1 Tax=Variovorax paradoxus RepID=UPI00037737A1
Putative metal-dependent hydrolase {ECO:0000313|EMBL:EJL77149.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative cyclase
SCNpilot_cont_300_bf_scaffold_84_curated_84
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82987..83721
DNA (735bp) protein (245aa)
short-chain dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003731649
Uncharacterized protein {ECO:0000313|EMBL:EJL77148.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
short-chain dehydrogenase/reductase sdr
SCNpilot_cont_300_bf_scaffold_84_curated_85
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83771..84937
DNA (1167bp) protein (389aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J2TFK1_9BURK
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL77147.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ABC transporter, substrate-binding protein
SCNpilot_cont_300_bf_scaffold_84_curated_86
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84939..86084
DNA (1146bp) protein (382aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J3CS69_9BURK
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL77146.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
extracellular ligand-binding receptor
SCNpilot_cont_300_bf_scaffold_84_curated_87
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86113..87438
DNA (1326bp) protein (442aa)
oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00037C8DC6
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ACS18153.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_84_curated_88
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87435..87899
DNA (465bp) protein (155aa)
aromatic-ring-hydroxylating dioxygenase subunit beta n=1 Tax=Variovorax paradoxus RepID=UPI00036B1F74
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17884.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
aromatic-ring-hydroxylating dioxygenase subunit beta
SCNpilot_cont_300_bf_scaffold_84_curated_89
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87943..89106
DNA (1164bp) protein (388aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J2KVX1_9BURK
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17808.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
extracellular ligand-binding receptor
SCNpilot_cont_300_bf_scaffold_84_curated_90
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89141..90196
DNA (1056bp) protein (352aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00035EB9F9
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL77142.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ABC transporter, permease protein
Displaying items 61-90 of 197 in total

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