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SCNpilot_cont_300_bf_scaffold_343_curated

Search features with annotation key words

Displaying items 31-60 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_343_curated_31
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50328..51701
DNA (1374bp) protein (458aa)
three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Variovorax paradoxus RepID=UPI00036B49A5
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:EJL79189.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_343_curated_32
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51840..53393)
DNA (1554bp) protein (518aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=Variovorax sp. CF313 RepID=J2KG74_9BURK
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:EJL79190.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TolC family type I secretion outer membrane protein; K12340 outer membrane channel protein
SCNpilot_cont_300_bf_scaffold_343_curated_33
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53415..53750)
DNA (336bp) protein (112aa)
Rhodanese domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V951_VARPE
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26818.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
rhodanese domain-containing protein
SCNpilot_cont_300_bf_scaffold_343_curated_34
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53764..54441)
DNA (678bp) protein (226aa)
type 11 methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate carboxylmethyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J2TKV2_9BURK
Protein-L-isoaspartate carboxylmethyltransferase {ECO:0000313|EMBL:EJL79192.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_343_curated_35
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54531..55208)
DNA (678bp) protein (226aa)
Transcriptional regulator, TetR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V949_VARPE
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADU38464.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_36
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55311..55862
DNA (552bp) protein (184aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Variovorax sp. CF313 RepID=J3CV87_9BURK
SCNpilot_cont_300_bf_scaffold_343_curated_37
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55877..56266
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V947_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38462.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_38
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56347..58521
DNA (2175bp) protein (725aa)
TonB-dependent siderophore receptor n=1 Tax=Janthinobacterium lividum RepID=UPI0002899411
TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:CDG86055.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
TonB-dependent siderophore receptor
SCNpilot_cont_300_bf_scaffold_343_curated_39
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58538..58933
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036AEEAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20334.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_343_curated_40
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59015..61108
DNA (2094bp) protein (698aa)
Outer membrane receptor protein n=1 Tax=Variovorax sp. CF313 RepID=J3CVQ4_9BURK
Outer membrane receptor protein {ECO:0000313|EMBL:EJL79196.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative plug domain-containing TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_343_curated_41
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61269..62222
DNA (954bp) protein (318aa)
Auxin Efflux Carrier n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V945_VARPE
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26823.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
auxin efflux carrier; K07088
SCNpilot_cont_300_bf_scaffold_343_curated_42
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62244..62897)
DNA (654bp) protein (218aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Variovorax sp. CF313 RepID=J2KG84_9BURK
SCNpilot_cont_300_bf_scaffold_343_curated_43
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62927..63505
DNA (579bp) protein (193aa)
Putative MobA-like protein n=1 Tax=Variovorax sp. CF313 RepID=J3CVQ7_9BURK
Putative MobA-like protein {ECO:0000313|EMBL:EJL79201.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
MobA-like protein
SCNpilot_cont_300_bf_scaffold_343_curated_44
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63495..64031)
DNA (537bp) protein (179aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
superoxide dismutase copper/zinc binding protein; K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1]
Superoxide dismutase [Cu-Zn] n=1 Tax=Variovorax sp. CF313 RepID=J2TKW0_9BURK
SCNpilot_cont_300_bf_scaffold_343_curated_45
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64028..64717)
DNA (690bp) protein (230aa)
calcium transporter ChaC n=1 Tax=Variovorax paradoxus RepID=UPI00037E0FAF
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26826.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
chac family protein; K07232 cation transport protein ChaC
SCNpilot_cont_300_bf_scaffold_343_curated_46
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64853..65410
DNA (558bp) protein (186aa)
Outer membrane protein/peptidoglycan-associated lipoprotein n=1 Tax=Variovorax sp. CF313 RepID=J3CV93_9BURK
Outer membrane protein/peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EJL79204.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ompa/motb domain-containing protein
SCNpilot_cont_300_bf_scaffold_343_curated_47
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65490..66476)
DNA (987bp) protein (329aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium sp. CF080 RepID=J2JNB5_9RHIZ
AraC family transcriptional regulator {ECO:0000313|EMBL:KKC34026.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_343_curated_48
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66534..67355)
DNA (822bp) protein (274aa)
Estradiol 17-beta-dehydrogenase {ECO:0000313|EMBL:EUB98416.1}; EC=1.1.1.62 {ECO:0000313|EMBL:EUB98416.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
estradiol 17-beta-dehydrogenase (EC:1.1.1.62)
AraC family transcriptional regulator n=1 Tax=Rhizobium radiobacter RepID=UPI00036EFC21
SCNpilot_cont_300_bf_scaffold_343_curated_49
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67665..69497
DNA (1833bp) protein (611aa)
6-phosphogluconate dehydratase {ECO:0000313|EMBL:ADU38452.1}; EC=4.2.1.12 {ECO:0000313|EMBL:ADU38452.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
6-phosphogluconate dehydratase (EC:4.2.1.12); K01690 phosphogluconate dehydratase [EC:4.2.1.12]
6-phosphogluconate dehydratase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8A0_VARPE
SCNpilot_cont_300_bf_scaffold_343_curated_50
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69657..70292
DNA (636bp) protein (212aa)
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26885.1}; EC=4.1.2.14 {ECO:0000313|EMBL:KIQ26885.1};; EC=4.1.3.16 {ECO:0000313|EMBL:KIQ26885.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (EC:4.1.2.14); K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
ketohydroxyglutarate aldolase n=1 Tax=Variovorax paradoxus RepID=UPI0003643C5E
SCNpilot_cont_300_bf_scaffold_343_curated_51
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70295..71023
DNA (729bp) protein (243aa)
haloacid dehalogenase, type II; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
Haloacid dehalogenase, type II n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUA9_VARPS
Haloacid dehalogenase, type II {ECO:0000313|EMBL:ACS20322.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_343_curated_52
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71036..73225)
DNA (2190bp) protein (730aa)
ggt2; gamma-glutamyltranspeptidase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Probable gamma-glutamyltranspeptidase protein n=1 Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8XVB0_RALSO
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26830.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_343_curated_53
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73337..73891)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V897_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38449.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_54
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74155..75381
DNA (1227bp) protein (409aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9THI9_RICCO
Uncharacterized protein {ECO:0000313|EMBL:AIJ46905.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_55
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75308..75616)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI000371C2C2
Uncharacterized protein {ECO:0000313|EMBL:AIJ46906.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
SCNpilot_cont_300_bf_scaffold_343_curated_56
unknown

Not on your lists

comp(75613..75756)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_343_curated_57
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76052..76363
DNA (312bp) protein (104aa)
UPI0003D61ABC related cluster n=1 Tax=unknown RepID=UPI0003D61ABC
Transcriptional regulator {ECO:0000313|EMBL:AIJ46908.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
SCNpilot_cont_300_bf_scaffold_343_curated_58
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76476..76889
DNA (414bp) protein (138aa)
Putative transcriptional regulator with C-terminal CBS domain containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KH25_9BURK
XRE family transcriptional regulator {ECO:0000313|EMBL:GAO24350.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
helix-turn-helix domain-containing protein
SCNpilot_cont_300_bf_scaffold_343_curated_59
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76894..77640
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI000371016B
Uncharacterized protein {ECO:0000313|EMBL:GAO24348.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_60
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77637..77900)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XAT0_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD42367.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
Displaying items 31-60 of 60 in total

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