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SCNpilot_cont_300_bf_scaffold_343_curated

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_343_curated_1
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..20357)
DNA (20355bp) protein (6785aa)
Probable hemagglutinin/hemolysin-related protein n=1 Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8XQP2_RALSO
RSp1180; hemagglutinin/hemolysin-like protein rbh
Probable hemagglutinin/hemolysin-related protein {ECO:0000313|EMBL:CAD18331.1}; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
SCNpilot_cont_300_bf_scaffold_343_curated_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21319..21528)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B737B
Uncharacterized protein {ECO:0000313|EMBL:EJL75047.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21725..22198
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CNJ2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL75046.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22293..24122
DNA (1830bp) protein (610aa)
5'-nucleotidase domain-containing protein; K01081 5'-nucleotidase [EC:3.1.3.5]
5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2K4F6_9BURK
5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase {ECO:0000313|EMBL:EJL75045.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_343_curated_5
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24207..25508)
DNA (1302bp) protein (434aa)
Transport protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SUL4_ALCXX
Transport protein {ECO:0000313|EMBL:EGP48233.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
hypothetical protein; K07148 uncharacterized protein
SCNpilot_cont_300_bf_scaffold_343_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25638..25997)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380FAD7
Variovorax paradoxus strain MEDvA23 contig_114, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ18484.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26098..26481)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003620920
roadblock/lc7 family protein; K07131
Roadblock/LC7 family protein {ECO:0000313|EMBL:ADU37205.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26510..27034)
DNA (525bp) protein (175aa)
GTP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036E9A74
hypothetical protein; K06945
Uncharacterized protein {ECO:0000313|EMBL:ADU37204.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27031..27789)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037202D5
Variovorax paradoxus strain MEDvA23 contig_114, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ18486.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28160..28744
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CN57_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL75044.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
lipoprotein
SCNpilot_cont_300_bf_scaffold_343_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28761..29603)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D9FD1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU50960.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_343_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29634..30449)
DNA (816bp) protein (272aa)
4'-phosphopantetheinyl transferase; K06133 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
4'-phosphopantetheinyl transferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V986_VARPE
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:ADU38501.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_13
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30613..31389
DNA (777bp) protein (259aa)
Siderophore-interacting protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HXS9_9BRAD
Siderophore-interacting protein {ECO:0000313|EMBL:EJN09101.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_14
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31412..32065)
DNA (654bp) protein (218aa)
TetR family transcriptional regulator n=1 Tax=Advenella kashmirensis W13003 RepID=V8QX39_9BURK
TetR family transcriptional regulator {ECO:0000313|EMBL:ETF03928.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
tetracycline resistance regulatory protein tetr
SCNpilot_cont_300_bf_scaffold_343_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32138..32842)
DNA (705bp) protein (235aa)
glutathione s-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Variovorax paradoxus RepID=UPI00037E11E7
Glutathione S-transferase domain {ECO:0000313|EMBL:ADU38482.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_16
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32894..33853)
DNA (960bp) protein (320aa)
Luciferase-type oxidoreductase, BA3436 family n=1 Tax=Acidovorax sp. CF316 RepID=J0KJE1_9BURK
Luciferase-type oxidoreductase, BA3436 family {ECO:0000313|EMBL:EJE53770.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
luciferase-type oxidoreductase
SCNpilot_cont_300_bf_scaffold_343_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34045..35364
DNA (1320bp) protein (440aa)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036C86A2
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADU38480.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35375..36781
DNA (1407bp) protein (469aa)
D-lactate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00037BEAE7
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26804.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
fad linked oxidase domain-containing protein
SCNpilot_cont_300_bf_scaffold_343_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36872..37846
DNA (975bp) protein (325aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V962_VARPE
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU38477.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37843..38559)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380E4C7
Uncharacterized protein {ECO:0000313|EMBL:EKS39805.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38743..39546
DNA (804bp) protein (268aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-ketoacyl-ACP reductase n=1 Tax=Variovorax paradoxus RepID=UPI00035F9C4F
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26807.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_343_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39573..40709
DNA (1137bp) protein (379aa)
saccharopine dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000368D542
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26808.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40714..42264
DNA (1551bp) protein (517aa)
fatty-acid--CoA ligase n=1 Tax=Variovorax paradoxus RepID=UPI00037EA407
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26809.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ligase
SCNpilot_cont_300_bf_scaffold_343_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42252..43880)
DNA (1629bp) protein (543aa)
AMP-dependent synthetase n=1 Tax=Variovorax paradoxus RepID=UPI00037520A8
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADU38476.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_343_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43981..44820)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V960_VARPE
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26810.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45055..45714
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V959_VARPE
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26811.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45728..46687)
DNA (960bp) protein (320aa)
Putative permease, DMT superfamily n=1 Tax=Variovorax sp. CF313 RepID=J2KG69_9BURK
Putative permease, DMT superfamily {ECO:0000313|EMBL:EJL79185.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_343_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46727..47224)
DNA (498bp) protein (166aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CVP9_9BURK
methylated-DNA--protein-cysteine methyltransferase
SCNpilot_cont_300_bf_scaffold_343_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47231..48817)
DNA (1587bp) protein (529aa)
AraC family transcriptional regulator; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Adenosine deaminase n=1 Tax=Variovorax sp. CF313 RepID=J2TKU9_9BURK
Adenosine deaminase {ECO:0000313|EMBL:EJL79187.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_343_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48929..50311
DNA (1383bp) protein (461aa)
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain ii; K01840 phosphomannomutase [EC:5.4.2.8]
Phosphomannomutase n=1 Tax=Variovorax sp. CF313 RepID=J2L1S0_9BURK
Phosphomannomutase {ECO:0000313|EMBL:EJL79188.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Displaying items 1-30 of 60 in total

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