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SCNpilot_expt_1000_bf_scaffold_10386_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10386_curated_1
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..803)
DNA (801bp) protein (267aa)
NADH dehydrogenase n=1 Tax=Novispirillum itersonii RepID=UPI0003789CA3 rbh
NADH dehydrogenase I subunit F {ECO:0000313|EMBL:KCZ97753.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KCZ97753.1};; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
nuoF; NADH dehydrogenase I subunit F (EC:1.6.5.3 1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] rbh
SCNpilot_expt_1000_bf_scaffold_10386_curated_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(803..1543)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000378453A
NADH dehydrogenase subunit E (EC:1.6.5.3); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADH dehydrogenase subunit E {ECO:0000313|EMBL:ABA05143.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABA05143.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_10386_curated_3
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1552..1899)
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ53849.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
hypothetical protein
NTF2 enzyme family protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GWV1_CAUCN
SCNpilot_expt_1000_bf_scaffold_10386_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1896..2459)
DNA (564bp) protein (188aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NADH dehydrogenase I subunit D; K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit D n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=NUOD_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_10386_curated_5
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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2857..3258
DNA (402bp) protein (134aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY15158.1}; Flags: Fragment;; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A1K8_9BACT
SCNpilot_expt_1000_bf_scaffold_10386_curated_6
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3117..3749)
DNA (633bp) protein (211aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.3); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit C n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUU8_METNO
SCNpilot_expt_1000_bf_scaffold_10386_curated_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3751..4317)
DNA (567bp) protein (189aa)
NADH-quinone oxidoreductase subunit beta (EC:1.6.99.5); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit B n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JZE4_HYPDA rbh
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_10386_curated_8
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(4308..4673)
DNA (366bp) protein (122aa)
NAD(P)H-quinone oxidoreductase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.- {ECO:0000256|HAMAP-Rule:MF_01394};; NAD(P)H dehydrogenase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; NADH-plastoquinone oxidoreductase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit A n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY49_PARL1
SCNpilot_expt_1000_bf_scaffold_10386_curated_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5102..5605)
DNA (504bp) protein (168aa)
Signal transduction protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JYC1_9PROT
Signal transduction protein {ECO:0000313|EMBL:EKE70205.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_expt_1000_bf_scaffold_10386_curated_10
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5927..7264
DNA (1338bp) protein (446aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
Site-specific recombinase, phage integrase family protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W813_9CAUL rbh
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10386_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7891..8130)
DNA (240bp) protein (80aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU78_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS63461.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_10386_curated_12
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8137..8493)
DNA (357bp) protein (119aa)
Conjugal transfer protein TrbI n=1 Tax=Sphingobium lactosutens DS20 RepID=T0ISP3_9SPHN
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EQB14820.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
conjugal transfer protein trbI; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_10386_curated_13
unknown

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8719..9438
DNA (720bp) protein (240aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10386_curated_14
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9352..10371)
DNA (1020bp) protein (340aa)
P-type conjugative transfer protein TrbG n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FWM2_PHAMO rbh
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:CCG42760.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9 rbh
SCNpilot_expt_1000_bf_scaffold_10386_curated_15
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10384..11067)
DNA (684bp) protein (228aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HRU6_9SPHN rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EQB14818.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
SCNpilot_expt_1000_bf_scaffold_10386_curated_16
unknown

Not on your lists

11502..11735
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10386_curated_17
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11793..12083
DNA (291bp) protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:EVT88820.1}; TaxID=1441931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA09.;"
UPI0003CF1E3E related cluster n=1 Tax=unknown RepID=UPI0003CF1E3E
SCNpilot_expt_1000_bf_scaffold_10386_curated_18

Not on your lists

comp(12449..13171)
DNA (723bp) protein (241aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48482.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conjugal transfer protein TrbJ
P-type conjugative transfer protein TrbJ n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU73_PARL1
Displaying 18 items

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