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SCNpilot_expt_1000_bf_scaffold_6326_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6326_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..842)
DNA (840bp) protein (280aa)
DNA translocase FtsK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJS6_9RHIZ rbh
DNA translocase FtsK {ECO:0000313|EMBL:EYR79655.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsK2; cell division protein; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_2
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1081..2280)
DNA (1200bp) protein (400aa)
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
Ammonium transporter n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5G4_9RHIZ rbh
amtB; ammonium transporter rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2433..2771)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ELR9_9RHIZ
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EYR79653.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glnB2; nitrogen regulatory protein P-II
SCNpilot_expt_1000_bf_scaffold_6326_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3001..3879)
DNA (879bp) protein (293aa)
Acyl-CoA thioesterase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8N0_9RHIZ rbh
Acyl-CoA thioesterase 2 {ECO:0000313|EMBL:EYR79652.1}; EC=3.1.2.- {ECO:0000313|EMBL:EYR79652.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acyl-CoA thioesterase II; K10805 acyl-CoA thioesterase II [EC:3.1.2.-] rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3974..5209
DNA (1236bp) protein (412aa)
Putative 2-octaprenyl-6-methoxyphenyl hydroxylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERI5_9RHIZ rbh
Putative 2-octaprenyl-6-methoxyphenyl hydroxylase {ECO:0000313|EMBL:EYR79651.1}; EC=1.14.13.- {ECO:0000313|EMBL:EYR79651.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2-octaprenyl-6-methoxyphenyl hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5660..5848)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTY2_9RHIZ
UPF0434 protein SHLA_6c000540 {ECO:0000256|HAMAP-Rule:MF_01187}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09791 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6326_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5857..6573)
DNA (717bp) protein (239aa)
ATP-dependent protease La domain-containing protein {ECO:0000313|EMBL:EYR79649.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003687808 rbh
peptidase S16 lon domain-containing protein; K07157 rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6662..7624)
DNA (963bp) protein (321aa)
Thioredoxin TrxA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWJ8_9RHIZ rbh
Thioredoxin TrxA {ECO:0000313|EMBL:EYR79648.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thioredoxin; K05838 putative thioredoxin rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7682..8191)
DNA (510bp) protein (170aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR79647.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
prolyl-tRNA synthetase n=1 Tax=Rhizobium giardinii RepID=UPI000367003E
YbaK/prolyl-tRNA synthetase associated region
SCNpilot_expt_1000_bf_scaffold_6326_curated_trna_1
unknown

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8407..8478
DNA (72bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_6326_curated_10
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9367..10848)
DNA (1482bp) protein (494aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:KJS10535.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
Putative betaine-aldehyde dehydrogenase n=1 Tax=Rhizobium loti RepID=M5B2S5_RHILI rbh
aldehyde/betaine dehydrogenase; K07248 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21] rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_11
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10875..11915)
DNA (1041bp) protein (347aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003468CC5 rbh
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_12
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11924..12061)
DNA (138bp) protein (46aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS10559.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
Ribose ABC transporter, permease protein id=2113487 bin=GWB2_Chloroflexi_54_36 species=Mesorhizobium loti genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
SCNpilot_expt_1000_bf_scaffold_6326_curated_13
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12865..14127)
DNA (1263bp) protein (421aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS10534.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
Probable ribose ABC transporter n=1 Tax=Rhizobium loti RepID=M5B2S6_RHILI rbh
ABC transporter protein, ATP binding component (EC:3.6.3.17); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
SCNpilot_expt_1000_bf_scaffold_6326_curated_14
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14372..15436)
DNA (1065bp) protein (355aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS10533.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
Probable D-ribose-binding protein n=1 Tax=Rhizobium loti RepID=M5ANH7_RHILI rbh
D-ribose-binding protein
SCNpilot_expt_1000_bf_scaffold_6326_curated_15
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15657..16457
DNA (801bp) protein (267aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS10532.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
DeoR family transcriptional regulator; K02081 DeoR family transcriptional regulator, aga operon transcriptional repressor
Transcriptional regulator, DeoR family n=2 Tax=Acidiphilium RepID=A5FXM4_ACICJ
SCNpilot_expt_1000_bf_scaffold_6326_curated_16
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16770..17453
DNA (684bp) protein (228aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS10531.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IH51_AZOC5
SCNpilot_expt_1000_bf_scaffold_6326_curated_17
unknown

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17619..18116
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6326_curated_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18184..19515)
DNA (1332bp) protein (444aa)
D-amino acid oxidase {ECO:0000313|EMBL:KEA08621.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
D-amino acid oxidase rbh
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium sp. AP16 RepID=J2D899_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_6326_curated_19
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19565..20188)
DNA (624bp) protein (208aa)
Tax=BJP_IG2158_Rhodobacterales_69_12
Tiorf100 protein n=1 Tax=Rhizobium radiobacter RepID=Q9R6F9_RHIRD
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6326_curated_20
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20211..21518)
DNA (1308bp) protein (436aa)
Uncharacterized protein {ECO:0000313|EMBL:EXL06858.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
D-amino acid oxidase family protein
AgaE n=2 Tax=Ketogulonicigenium vulgare RepID=E3F4D2_KETVY
Displaying 21 items

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