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SCNpilot_expt_1000_bf_scaffold_6201_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6201_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1285
DNA (1284bp) protein (428aa)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFR8_9RHIZ
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glgB; protein GlgB; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
SCNpilot_expt_1000_bf_scaffold_6201_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1355..2617
DNA (1263bp) protein (421aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glucose-1-phosphate adenylyltransferase n=1 Tax=Rhizobium giardinii RepID=UPI0003623E90 rbh
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27); K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] rbh
SCNpilot_expt_1000_bf_scaffold_6201_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2625..4064
DNA (1440bp) protein (480aa)
Glycogen synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBR9_9RHIZ rbh
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glga3; hypothetical protein; K00703 starch synthase [EC:2.4.1.21] rbh
SCNpilot_expt_1000_bf_scaffold_6201_curated_4
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3937..4986)
DNA (1050bp) protein (350aa)
Tax=GWE2_Gallionellales_58_10_curated
SCNpilot_expt_1000_bf_scaffold_6201_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5339..5686
DNA (348bp) protein (116aa)
Phosphoglucomutase Pgm n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETI0_9RHIZ
Phosphoglucomutase Pgm {ECO:0000313|EMBL:EYR80526.1}; EC=5.4.2.2 {ECO:0000313|EMBL:EYR80526.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphoglucomutase; K01835 phosphoglucomutase [EC:5.4.2.2]
SCNpilot_expt_1000_bf_scaffold_6201_curated_6
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5679..6641)
DNA (963bp) protein (321aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD85149.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
Uncharacterized protein id=24548379 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Bifidobacterium bifidum CAG:234 genus=Bifidobacterium taxon_order=Bifidobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
SCNpilot_expt_1000_bf_scaffold_6201_curated_7
Cyanobium sp. CACIAM 14, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(6887..7195)
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:KEF41155.1}; TaxID=1496688 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium sp. CACIAM 14.;"
SCNpilot_expt_1000_bf_scaffold_6201_curated_8
unknown

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8272..8364
DNA (93bp) protein (31aa)
Streptothricin-acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRP3_9RHIZ
Displaying 8 items

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