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SCNpilot_expt_1000_bf_scaffold_2746_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2746_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..412)
DNA (411bp) protein (137aa)
ABC transporter,periplasmic solute-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXF8_9RHIZ
ABC transporter,periplasmic solute-binding protein {ECO:0000313|EMBL:EYR78091.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter,periplasmic solute-binding protein
SCNpilot_expt_1000_bf_scaffold_2746_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(604..1344)
DNA (741bp) protein (247aa)
Protein FixR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D225_9RHIZ rbh
Dehydrogenase {ECO:0000313|EMBL:EYR78092.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100) rbh
SCNpilot_expt_1000_bf_scaffold_2746_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1423..2103)
DNA (681bp) protein (227aa)
GntR family transcriptional regulator {ECO:0000313|EMBL:KDP72347.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT20_9RHIZ rbh
GntR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2746_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2323..3417
DNA (1095bp) protein (365aa)
Aminoglycoside phosphotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD53_9RHIZ rbh
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EYR78094.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative homoserine kinase type II (protein kinase fold) rbh
SCNpilot_expt_1000_bf_scaffold_2746_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3422..4738
DNA (1317bp) protein (439aa)
Putative 4-aminobutyrate aminotransferase and related aminotransferase {ECO:0000313|EMBL:AHK46037.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
alanine--glyoxylate transaminase (EC:2.6.1.44) rbh
Alanine--glyoxylate transaminase n=3 Tax=Rhizobium meliloti RepID=F6C0N8_SINMB rbh
SCNpilot_expt_1000_bf_scaffold_2746_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4749..5717)
DNA (969bp) protein (323aa)
Putative sugar uptake ABC transporter permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFT2_9RHIZ rbh
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR82574.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative sugar uptake ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2746_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5714..6739)
DNA (1026bp) protein (342aa)
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXT1_9RHIZ rbh
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR82575.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2746_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6736..8253)
DNA (1518bp) protein (506aa)
ABC-type sugar transport system ATPase component {ECO:0000313|EMBL:EYR82576.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037480DF rbh
ytfR; ABC transporter ATP-binding protein YtfR rbh
SCNpilot_expt_1000_bf_scaffold_2746_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8348..9310)
DNA (963bp) protein (321aa)
Putative pentose monosaccharide ABC transporter,periplasmic solute-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNC8_9RHIZ rbh
Putative pentose monosaccharide ABC transporter,periplasmic solute-binding protein {ECO:0000313|EMBL:EYR82577.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type sugar transport system, periplasmic component rbh
Displaying 9 items

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