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SCNpilot_expt_1000_bf_scaffold_17105_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_17105_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..749)
DNA (747bp) protein (249aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036744CE
dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
SCNpilot_expt_1000_bf_scaffold_17105_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(765..1421)
DNA (657bp) protein (219aa)
Pyruvate/2-oxoglutarate dehydrogenase complex E1 component {ECO:0000313|EMBL:EYR80045.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pdhB; pyruvate dehydrogenase E1 component subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MBK2_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_17105_curated_3
unknown

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1670..1933
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_17105_curated_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2185..2673)
DNA (489bp) protein (163aa)
pdhA2; pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) rbh
Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X834_RHIFR rbh
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_17105_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3378..3686)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80047.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_17105_curated_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5251..5634)
DNA (384bp) protein (128aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; S
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036E1FDF
kdsA; putative 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
SCNpilot_expt_1000_bf_scaffold_17105_curated_7
unknown

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5730..5903
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_17105_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6078..6971)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC98_9RHIZ rbh
Glyoxalase-like domain-containing protein {ECO:0000313|EMBL:EYR81315.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_17105_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7011..8345
DNA (1335bp) protein (445aa)
Glycine/D-amino acid oxidase {ECO:0000313|EMBL:EYR81314.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FAD dependent oxidoreductase (EC:1.-.-.-) rbh
FAD dependent oxidoreductase n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LEG3_AGRSH rbh
Displaying 9 items

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