ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5289_curated

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5289_curated_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

527..892
DNA (366bp) protein (122aa)
Dipeptide transport system permease protein dppC n=3 Tax=Ochrobactrum RepID=C4WPT8_9RHIZ
Putative permease component of ABC transporter {ECO:0000313|EMBL:AHK47626.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5289_curated_2
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(1418..1651)
DNA (234bp) protein (78aa)
Tax=RBG_16_RIF_CHLX_69_14_curated
Uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08YM3_STIAD
SCNpilot_expt_1000_bf_scaffold_5289_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1942..2919
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003611281 rbh
Putative oligopeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AHK47628.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_5289_curated_4
unknown

Not on your lists

comp(2826..3353)
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5289_curated_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3518..5074
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000368112A rbh
Beta-lactamase {ECO:0000313|EMBL:ENN84943.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
D-aminopeptidase; K01266 D-aminopeptidase [EC:3.4.11.19] rbh
SCNpilot_expt_1000_bf_scaffold_5289_curated_6
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5226..7925)
DNA (2700bp) protein (900aa)
UPI0003CE75AB related cluster n=1 Tax=unknown RepID=UPI0003CE75AB rbh
Uncharacterized protein {ECO:0000313|EMBL:ESY65649.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5289_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8161..9393)
DNA (1233bp) protein (411aa)
FAD dependent oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C1B9_9RHIZ rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:EYR83943.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_5289_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9599..9721)
DNA (123bp) protein (41aa)
Dimethyl-sulfide monooxygenase DmoA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D271_9RHIZ
Dimethyl-sulfide monooxygenase DmoA {ECO:0000313|EMBL:EYR82500.1}; EC=1.14.13.131 {ECO:0000313|EMBL:EYR82500.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 8 items

View Taxonomy