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berkeley_reactor_200306_planktonic_scaffold_23420

Search features with annotation key words

Displaying items 301-330 of 345 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_23420_299
unknown

Not on your lists

344198..344335
DNA (138bp) protein (46aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_300
unknown

Not on your lists

344361..344948
DNA (588bp) protein (196aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_301
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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345246..346748
DNA (1503bp) protein (501aa)
Integrase family protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMM7_9BACT
integrase
Integrase {ECO:0000313|EMBL:AHF92699.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_23420_302
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

346766..347281
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Enterobacter cloacae UCICRE 12 RepID=V3DTZ3_ENTCL
Uncharacterized protein {ECO:0000313|EMBL:ESL80508.1}; TaxID=1329856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae UCICRE 12.;"
berkeley_reactor_200306_planktonic_scaffold_23420_303
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(347288..351982)
DNA (4695bp) protein (1565aa)
Helicase, C-terminal n=1 Tax=mine drainage metagenome RepID=E6QW78_9ZZZZ
helicase, C-terminal, partial
Helicase, C-terminal, partial {ECO:0000313|EMBL:BAO29738.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
berkeley_reactor_200306_planktonic_scaffold_23420_304
unknown

Not on your lists

comp(352102..352356)
DNA (255bp) protein (85aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_305
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(352419..352718)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TSF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC75075.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
berkeley_reactor_200306_planktonic_scaffold_23420_306
unknown

Not on your lists

comp(352973..353197)
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_307
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(353260..353835)
DNA (576bp) protein (192aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94692.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_23420_308
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(353832..354896)
DNA (1065bp) protein (355aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF92719.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_23420_309
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(354899..355828)
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94691.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_23420_310
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(355809..356468)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF92718.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_23420_311
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(356465..357553)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPH1_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74490.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_23420_312
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(357575..358375)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQ40_OPITP
Uncharacterized protein {ECO:0000313|EMBL:ACB77759.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_313
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(358426..358842)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPG8_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74487.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_23420_314
unknown

Not on your lists

comp(358862..359104)
DNA (243bp) protein (81aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_315
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(359101..361827)
DNA (2727bp) protein (909aa)
Putative uncharacterized protein id=4668346 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_23420_316
unknown

Not on your lists

comp(361831..362130)
DNA (300bp) protein (100aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_317
unknown

Not on your lists

comp(362130..362516)
DNA (387bp) protein (129aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_318
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(362513..362848)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMR6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF94686.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_23420_319
unknown

Not on your lists

comp(362896..363204)
DNA (309bp) protein (103aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_320
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

363388..364299
DNA (912bp) protein (304aa)
ATPase AAA-2 domain protein id=4164451 bin=GWF2_Lentisphaerae_49_21 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
ATPase
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_23420_321
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(364612..365268)
DNA (657bp) protein (219aa)
DNA repair protein RadC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSW5_9BACT
radC; DNA repair protein RadC
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
berkeley_reactor_200306_planktonic_scaffold_23420_322
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(366247..367140)
DNA (894bp) protein (298aa)
Putative PAS/PAC sensor protein n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QER7_DESB2
PAS/PAC sensor protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
berkeley_reactor_200306_planktonic_scaffold_23420_323
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(367223..368119)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003686629
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACB74725.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_23420_324
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

368736..369422
DNA (687bp) protein (229aa)
peptidase n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174494D
Peptidase membrane zinc metallopeptidase putative {ECO:0000313|EMBL:EDY19486.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
peptidase membrane zinc metallopeptidase putative
berkeley_reactor_200306_planktonic_scaffold_23420_325
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

369456..369803
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCN4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY15799.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_23420_326
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

369859..370797
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LF77_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
berkeley_reactor_200306_planktonic_scaffold_23420_327
unknown

Not on your lists

comp(371259..371495)
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_23420_328
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

371504..372148
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1INX0_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF41430.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Displaying items 301-330 of 345 in total

View Taxonomy