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berkeley_reactor_200306_planktonic_scaffold_89056

Search features with annotation key words

Displaying items 1-30 of 218 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_89056_1
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1494..1814)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A68FB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGE87350.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
berkeley_reactor_200306_planktonic_scaffold_89056_2
unknown

Not on your lists

comp(1783..2079)
DNA (297bp) protein (99aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89056_3

Not on your lists

2989..3414
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Paenibacillus polymyxa (strain SC2) RepID=E3ELC7_PAEPS
Uncharacterized protein {ECO:0000313|EMBL:KKN81620.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89056_4
unknown

Not on your lists

3678..4100
DNA (423bp) protein (141aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89056_5
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4648..6927
DNA (2280bp) protein (760aa)
Adhesin AidA-related id=2859375 bin=GWF2_Bacteroidetes_35_48 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
hypothetical protein
Tax=GWF2_Bacteroidetes_35_48_curated
berkeley_reactor_200306_planktonic_scaffold_89056_6
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7224..9164
DNA (1941bp) protein (647aa)
Uncharacterized protein n=1 Tax=Saprospira grandis DSM 2844 RepID=J0NYH2_9SPHI
adhesin AidA-related protein
Tax=GWF2_Bacteroidetes_35_48_curated
berkeley_reactor_200306_planktonic_scaffold_89056_7
Formosa sp. AK20, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9453..11519)
DNA (2067bp) protein (689aa)
Uncharacterized protein n=1 Tax=Formosa sp. AK20 RepID=M7MN11_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EMQ96461.1}; TaxID=1137281 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;"
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_89056_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11615..12268)
DNA (654bp) protein (218aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VY14_DYAFD
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACT96915.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_89056_9
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(12595..14340)
DNA (1746bp) protein (582aa)
Porphyromonas-type peptidyl-arginine deiminase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XVF3_9BACT
peptidylarginine deiminase-like protein
Tax=RBG_16_Zixibacteria_50_21_curated
berkeley_reactor_200306_planktonic_scaffold_89056_10
unknown

Not on your lists

14453..14608
DNA (156bp) protein (52aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89056_11
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15636..28214
DNA (12579bp) protein (4193aa)
Amino acid adenylation domain protein {ECO:0000313|EMBL:AJQ29985.1}; EC=2.3.1.94 {ECO:0000313|EMBL:AJQ29985.1};; EC=5.1.1.3 {ECO:0000313|EMBL:AJQ29985.1};; TaxID=1192197 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans JBW45.;"
amino acid adenylation domain protein (EC:5.1.1.3 2.3.1.94)
Amino acid adenylation domain protein n=1 Tax=Pelosinus fermentans JBW45 RepID=I8U1X2_9FIRM
berkeley_reactor_200306_planktonic_scaffold_89056_12
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

28251..29096
DNA (846bp) protein (282aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:ABX06600.1}; EC=1.1.1.157 {ECO:0000313|EMBL:ABX06600.1};; Flags: Precursor;; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AV12_HERA2
3-hydroxybutyryl-CoA dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_89056_13
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29144..29401
DNA (258bp) protein (86aa)
Phosphopantetheine-binding protein n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R4Z0_9CLOT
Phosphopantetheine-binding protein {ECO:0000313|EMBL:EPR13613.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89056_14
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

29474..30622
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase domain-containing protein (EC:1.3.99.2)
acyl-CoA dehydrogenase n=1 Tax=Scytonema hofmanni RepID=UPI00034D5F85
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KIJ83907.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
berkeley_reactor_200306_planktonic_scaffold_89056_15
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30631..31599
DNA (969bp) protein (323aa)
3-Oxoacyl-(Acyl-carrier-protein (ACP)) synthase III domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT91_CHIPD
3-oxoacyl-ACP synthase
3-Oxoacyl-(Acyl-carrier-protein (ACP)) synthase III domain protein {ECO:0000313|EMBL:ACU60881.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_89056_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31626..32705
DNA (1080bp) protein (360aa)
FkbH like protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT92_CHIPD
FkbH-like protein
FkbH like protein {ECO:0000313|EMBL:ACU60882.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_89056_17
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32789..36622
DNA (3834bp) protein (1278aa)
Non-ribosomal peptide synthetase/polyketide synthase n=3 Tax=Amycolatopsis mediterranei RepID=D8HQ21_AMYMU
non-ribosomal peptide synthetase/polyketide synthase
Non-ribosomal peptide synthetase/polyketide synthase {ECO:0000313|EMBL:AEK42624.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
berkeley_reactor_200306_planktonic_scaffold_89056_18
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36670..47511
DNA (10842bp) protein (3614aa)
Gramicidin synthetase n=1 Tax=Brevibacillus laterosporus PE36 RepID=U4WUV2_BRELA
NRPS domain-containing protein {ECO:0000313|EMBL:AIG26684.1}; TaxID=1042163 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus LMG 15441.;"
NRPS domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_89056_19
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(47917..49686)
DNA (1770bp) protein (590aa)
Hydrolase CocE/NonD family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7N8_9FLAO
Hydrolase CocE/NonD family protein {ECO:0000313|EMBL:EFK33552.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
peptidase S15
berkeley_reactor_200306_planktonic_scaffold_89056_20
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

50181..50693
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000361AA7F
Uncharacterized protein {ECO:0000313|EMBL:KFF21487.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89056_21
unknown

Not on your lists

50707..50910
DNA (204bp) protein (68aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89056_22
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50907..51974)
DNA (1068bp) protein (356aa)
Penicillin-binding protein AmpH, putative n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UCD3_9RHOB
Penicillin-binding protein AmpH, putative {ECO:0000313|EMBL:EAP90914.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
beta-lactamase
berkeley_reactor_200306_planktonic_scaffold_89056_23
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(52135..52629)
DNA (495bp) protein (165aa)
Transcriptional regulator MarR family protein n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CSE5_ELIME
Transcriptional regulator SlyA {ECO:0000313|EMBL:CEJ71578.1}; Flags: Precursor;; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
transcriptional regulator MarR family protein
berkeley_reactor_200306_planktonic_scaffold_89056_24
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53004..53948
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00034839B9
esterase
Esterase/lipase {ECO:0000313|EMBL:ABR91606.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
berkeley_reactor_200306_planktonic_scaffold_89056_25
Bacteroides stercoris, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

54020..54385
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Bacteroides stercoris RepID=B0NV77_BACSE
Uncharacterized protein {ECO:0000313|EMBL:EPH20300.1}; TaxID=1073351 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides stercoris CC31F.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_89056_26
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

54426..54833
DNA (408bp) protein (136aa)
SnoaL-like polyketide cyclase n=1 Tax=Leptospira meyeri serovar Semaranga str. Veldrot Semarang 173 RepID=M6C8Z3_LEPME
Ester cyclase {ECO:0000313|EMBL:KFF16133.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
ester cyclase
berkeley_reactor_200306_planktonic_scaffold_89056_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(54977..58774)
DNA (3798bp) protein (1266aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQG8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03215.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_89056_28
unknown

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comp(58923..59129)
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_89056_29
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

59180..59938
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B41492
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIZ62615.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
berkeley_reactor_200306_planktonic_scaffold_89056_30
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(60032..60931)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CA49_SPHS2
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADZ78475.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
Displaying items 1-30 of 218 in total

View Taxonomy