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berkeley_reactor_200306_planktonic_scaffold_4941

Search features with annotation key words

Displaying items 91-120 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_4941_91
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(85300..86874)
DNA (1575bp) protein (525aa)
Putative uncharacterized protein id=2770389 bin=GWF2_Bacteroidetes_41_31 species=Chryseobacterium gleum genus=Chryseobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
Tax=GWF2_Bacteroidetes_41_31_curated
berkeley_reactor_200306_planktonic_scaffold_4941_92
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(87223..88773)
DNA (1551bp) protein (517aa)
Uncharacterized protein {ECO:0000313|EMBL:KFF18666.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
berkeley_reactor_200306_planktonic_scaffold_4941_93
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

88922..90220
DNA (1299bp) protein (433aa)
RNA methyltransferase n=1 Tax=Dyadobacter beijingensis RepID=UPI00035D0161
putative RNA methylase
Putative RNA methylase {ECO:0000313|EMBL:ACT91670.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_4941_94
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(90370..90861)
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XV36_PEDHD
hypothetical protein
DNA damage-inducible protein DinB {ECO:0000313|EMBL:ETZ24610.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
berkeley_reactor_200306_planktonic_scaffold_4941_95
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(91013..91702)
DNA (690bp) protein (230aa)
Transcriptional regulator, DeoR family n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11X99_CYTH3
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:KIA91204.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
DeoR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_4941_96
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(91823..92131)
DNA (309bp) protein (103aa)
hypothetical protein id=7717050 bin=BACIGN_2 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
berkeley_reactor_200306_planktonic_scaffold_4941_97
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(92145..92870)
DNA (726bp) protein (242aa)
Putative periplasmic protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SLG6_9FLAO
hypothetical protein
Putative periplasmic protein {ECO:0000313|EMBL:ESU25225.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
berkeley_reactor_200306_planktonic_scaffold_4941_98
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(92904..94229)
DNA (1326bp) protein (442aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R7Q0_OWEHD
penicillin-binding protein, beta-lactamase class C
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:AEV33431.1}; Flags: Precursor;; TaxID=926562 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
berkeley_reactor_200306_planktonic_scaffold_4941_99
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

comp(94338..94913)
DNA (576bp) protein (192aa)
AraC family transcriptional reguator n=1 Tax=Niabella aurantiaca RepID=UPI000375B042
AraC family transcriptional regulator
Tax=BJP_IG2102_Bacteroidetes_40_9
berkeley_reactor_200306_planktonic_scaffold_4941_100
unknown

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comp(94897..95217)
DNA (321bp) protein (107aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4941_101

Not on your lists

comp(95225..95602)
DNA (378bp) protein (126aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48414.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative uncharacterized protein id=2262010 bin=GWB2_Chloroflexi_54_36 species=Stackebrandtia nassauensis genus=Stackebrandtia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4941_102
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(95698..96558)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Myroides injenensis RepID=UPI000287E3A5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIZ65388.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
berkeley_reactor_200306_planktonic_scaffold_4941_103
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(96574..98361)
DNA (1788bp) protein (596aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00036EF78A
mutS; DNA mismatch repair protein
DNA mismatch repair protein {ECO:0000313|EMBL:ABG59499.1}; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
berkeley_reactor_200306_planktonic_scaffold_4941_104
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(98484..99950)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J1KWH1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF15034.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4941_105
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(100300..101796)
DNA (1497bp) protein (499aa)
GH3 auxin-responsive promoter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T919_NIAKG
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:AEV96972.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_4941_106
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(101885..103102)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMJ8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01986.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_4941_107
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(103136..104626)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMJ7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01985.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_4941_108
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

104832..106862
DNA (2031bp) protein (677aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KTZ0_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE49126.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
berkeley_reactor_200306_planktonic_scaffold_4941_109
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

106931..108373
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037B77C5
Uncharacterized protein {ECO:0000313|EMBL:KIC92339.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4941_110
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

108416..109177
DNA (762bp) protein (254aa)
Inositol monophosphatase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMI2_CHIPD
inositol monophosphatase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_4941_111

Not on your lists

109220..109657
DNA (438bp) protein (146aa)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Nafulsella turpanensis RepID=UPI00037E2403
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut {ECO:0000313|EMBL:EJX09727.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase
berkeley_reactor_200306_planktonic_scaffold_4941_112
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

109715..110686
DNA (972bp) protein (324aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
6-phosphofructokinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG81_CHIPD
6-phosphofructokinase
berkeley_reactor_200306_planktonic_scaffold_4941_113
unknown

Not on your lists

111058..111231
DNA (174bp) protein (58aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4941_114
Muricauda lutaonensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(111875..112711)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12700 RepID=S3XS26_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:AKA34803.1}; TaxID=516051 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda.;" source="Muricauda lutaonensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4941_115
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(112757..113536)
DNA (780bp) protein (260aa)
Two-component system response regulator n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GW70_9SPHI
Two-component system response regulator {ECO:0000313|EMBL:EOR95770.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
two component transcriptional regulator, LytTR family protein
berkeley_reactor_200306_planktonic_scaffold_4941_116
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(113500..114585)
DNA (1086bp) protein (362aa)
Putative two-component system sensor protein histidine kinase n=1 Tax=Pedobacter sp. BAL39 RepID=A6E8P4_9SPHI
Putative two-component system sensor protein histidine kinase {ECO:0000313|EMBL:EDM38374.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
putative signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_4941_117
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(114593..115738)
DNA (1146bp) protein (382aa)
Putative two-component system sensor histidine kinase n=1 Tax=Pedobacter sp. BAL39 RepID=A6E8P5_9SPHI
Putative two-component system sensor histidine kinase {ECO:0000313|EMBL:EDM38375.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
signal transduction histidine kinase LytS
berkeley_reactor_200306_planktonic_scaffold_4941_118
unknown

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115916..116365
DNA (450bp) protein (150aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_4941_119
unknown

Not on your lists

116386..116637
DNA (252bp) protein (84aa)
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_4941_120
unknown

Not on your lists

116668..116910
DNA (243bp) protein (81aa)

This feature has no annotations

Displaying items 91-120 of 135 in total

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