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scn_reactorb_scaffold_39895

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scn_reactorb_scaffold_39895_1
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..744)
DNA (744bp) protein (248aa)
Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787};; Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
cobalt-precorrin-6A synthase n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00036B34A5
cobalt-precorrin-6A synthase
scn_reactorb_scaffold_39895_2
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1099..1731)
DNA (633bp) protein (211aa)
Thiamin pyrophosphokinase {ECO:0000313|EMBL:EOD01323.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EOD01323.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
thiN; thiamine pyrophosphokinase ThiN (EC:2.7.6.2)
Thiamin pyrophosphokinase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AVV6_9CLOT
scn_reactorb_scaffold_39895_3
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1760..2416)
DNA (657bp) protein (219aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
rpe; ribulose-phosphate 3-epimerase Rpe (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AXD6_9CLOT
scn_reactorb_scaffold_39895_4
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

2756..3292
DNA (537bp) protein (179aa)
RNA polymerase, sigma-24 subunit, ECF id=4206620 bin=GWF2_Clostridiales_36_10 species=Clostridium colicanis genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
sigma-70 family RNA polymerase sigma factor
Tax=GWF2_Clostridiales_36_10_curated
scn_reactorb_scaffold_39895_5
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

3387..4895
DNA (1509bp) protein (503aa)
id=4206619 bin=GWF2_Clostridiales_36_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
Tax=GWF2_Clostridiales_36_10_curated
scn_reactorb_scaffold_39895_6
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5092..6255)
DNA (1164bp) protein (388aa)
gcdB; glutaconyl-CoA decarboxylase subunit beta (EC:4.1.1.70)
Sodium ion-translocating decarboxylase, beta subunit n=2 Tax=Clostridium RepID=D3AAT8_9CLOT
Oxaloacetate decarboxylase beta subunit {ECO:0000313|EMBL:CCZ63690.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
scn_reactorb_scaffold_39895_7
Selenomonas sp. F0473, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6496..6888)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Selenomonas sp. F0473 RepID=K9D3R4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU72225.1}; TaxID=999423 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. F0473.;"
Pyruvate carboxylase
scn_reactorb_scaffold_39895_8
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6933..7316)
DNA (384bp) protein (128aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
Oxaloacetate decarboxylase gamma chainfamily protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6QJ71_9FIRM
sodium pump decarboxylase subunit gamma
scn_reactorb_scaffold_39895_9
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7334..8881)
DNA (1548bp) protein (516aa)
Carboxyl transferase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AVA6_9CLOT
Methylmalonyl-CoA carboxyltransferase {ECO:0000313|EMBL:KGG80619.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
AccA; acetyl-CoA carboxylase subunit alpha
scn_reactorb_scaffold_39895_10
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9265..9726
DNA (462bp) protein (154aa)
Transcriptional repressor NrdR n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AWY6_CLOA9
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
nrdR; transcriptional repressor NrdR
scn_reactorb_scaffold_39895_11
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9730..10362
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LNZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS57447.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
scn_reactorb_scaffold_39895_12
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10458..11816)
DNA (1359bp) protein (453aa)
Cell division protein FtsX n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CDT3_9CLOT
Cell division protein FtsX {ECO:0000313|EMBL:EOD00440.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
conserved membrane protein of unknown function
scn_reactorb_scaffold_39895_13
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11835..12194)
DNA (360bp) protein (120aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MK14_ALKOO
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABW20146.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
scn_reactorb_scaffold_39895_14
unknown

Not on your lists

12462..12776
DNA (315bp) protein (105aa)

This feature has no annotations

scn_reactorb_scaffold_39895_15
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13620..14306)
DNA (687bp) protein (229aa)
ABC transporter related protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AUY4_9CLOT
ABC transporter related protein {ECO:0000313|EMBL:EOD00442.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
scn_reactorb_scaffold_39895_16
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14519..16303)
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AV50_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGG79649.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
scn_reactorb_scaffold_39895_17
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16418..16792)
DNA (375bp) protein (125aa)
UspA n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CV52_9CLOT
UspA {ECO:0000313|EMBL:EOD00504.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
universal stress protein domain-containing protein
scn_reactorb_scaffold_39895_18
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17339..18043)
DNA (705bp) protein (235aa)
Phosphate regulon transcriptional regulatory protein PhoB (SphR) n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ARM2_9CLOT
Phosphate regulon transcriptional regulatory protein PhoB (SphR) {ECO:0000313|EMBL:EOC99797.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
two component transcriptional regulator
scn_reactorb_scaffold_39895_19
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18170..20116)
DNA (1947bp) protein (649aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G526_9FIRM
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EDR47400.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
selB; selenocysteine-specific elongation factor SelB
scn_reactorb_scaffold_39895_20
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20232..21662)
DNA (1431bp) protein (477aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
selA; selenocysteine synthase SelA (EC:2.9.1.1)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00037A79B5
scn_reactorb_scaffold_39895_21
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21684..22640)
DNA (957bp) protein (319aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
segregation protein A n=1 Tax=[Clostridium] glycolicum RepID=UPI000367225D
selenide, water dikinase
scn_reactorb_scaffold_39895_22
Anaerococcus tetradius, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22745..23437)
DNA (693bp) protein (231aa)
ComEA protein n=1 Tax=Anaerococcus tetradius ATCC 35098 RepID=C2CFN4_9FIRM
ComEA protein {ECO:0000313|EMBL:EEI83565.1}; TaxID=525255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus tetradius ATCC 35098.;"
competence protein ComEA
scn_reactorb_scaffold_39895_23
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23652..24974
DNA (1323bp) protein (441aa)
dacF3; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium ultunense Esp RepID=M1Z513_9CLOT
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:KGG80178.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
scn_reactorb_scaffold_39895_24
unknown

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comp(25112..25693)
DNA (582bp) protein (194aa)

This feature has no annotations

scn_reactorb_scaffold_39895_25
unknown

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comp(25813..26325)
DNA (513bp) protein (171aa)

This feature has no annotations

scn_reactorb_scaffold_39895_26
Peptoniphilus sp. BV3C26, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26622..26999)
DNA (378bp) protein (126aa)
Ribosomal silencing factor RsfS n=1 Tax=Clostridiales bacterium BV3C26 RepID=U7UEF4_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1111134 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus sp. BV3C26.;"
ribosome-associated protein, Iojap-like protein
scn_reactorb_scaffold_39895_27
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(27018..28922)
DNA (1905bp) protein (635aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
DNA topoisomerase n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AGF9_9FIRM
topB; Topoisomerase B
scn_reactorb_scaffold_39895_28
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28924..29895)
DNA (972bp) protein (324aa)
Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) {ECO:0000313|EMBL:CEQ23094.1}; EC=3.1.26.- {ECO:0000313|EMBL:CEQ23094.1};; EC=3.1.4.- {ECO:0000313|EMBL:CEQ23094.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
rng; ribonuclease G (EC:3.1.26.12)
Ribonuclease G n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B242_CLOA9
scn_reactorb_scaffold_39895_29
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30044..30310)
DNA (267bp) protein (89aa)
rng; ribonuclease G (EC:3.1.26.12)
Ribonuclease G {ECO:0000313|EMBL:AFS78990.1}; EC=3.1.26.12 {ECO:0000313|EMBL:AFS78990.1};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
Ribonuclease G n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B242_CLOA9
scn_reactorb_scaffold_39895_30
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30378..31082)
DNA (705bp) protein (235aa)
Radical SAM domain protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AT46_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:EOC99816.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
Displaying items 1-30 of 39 in total

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