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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 201-250 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4063 XAN48_44
Order: Xanthomonadales (88.89%)
9 14390 bp 71.12 55.35 94.09
cn_combo_scaffold_5603 XAN48_90
Order: Xanthomonadales (57.89%)
19 12104 bp 70.33 52.78 94.11
cn_combo_scaffold_12737 XAN48_303
Class: Gammaproteobacteria (50%)
6 5039 bp 69.50 47.65 94.13
cn_combo_scaffold_4436 XAN48_56
Genus: Arenimonas (60.87%)
23 25303 bp 67.83 56.62 94.14
cn_combo_scaffold_10410 XAN48_226
Order: Xanthomonadales (85.71%)
7 6083 bp 71.23 51.41 94.20
cn_combo_scaffold_10801 XAN48_236
Order: Xanthomonadales (100%)
9 5872 bp 69.74 50.54 94.26
cn_combo_scaffold_10815 XAN48_237
Order: Xanthomonadales (100%)
3 5864 bp 68.84 51.52 94.29
cn_combo_scaffold_5011 XAN48_68
Genus: Lysobacter (54.55%)
11 11740 bp 71.53 55.31 94.32
cn_combo_scaffold_10506 XAN48_228
Genus: Lysobacter (57.14%)
7 6030 bp 69.92 49.27 94.33
cn_combo_scaffold_8540 XAN48_168
Genus: Lysobacter (50%)
8 7668 bp 71.53 50.42 94.37
cn_combo_scaffold_3121 XAN48_26
Order: Xanthomonadales (68%)
25 29010 bp 59.39 49.79 94.44
cn_combo_scaffold_5920 XAN48_99
Genus: Lysobacter (61.54%)
13 10122 bp 69.32 55.08 94.44
cn_combo_scaffold_11970 XAN48_282
Genus: Lysobacter (60%)
5 5324 bp 71.86 50.54 94.44
cn_combo_scaffold_7633 XAN48_144
Order: Xanthomonadales (88.89%)
9 8078 bp 69.30 49.48 94.44
cn_combo_scaffold_2171 XAN48_10
Order: Xanthomonadales (80.77%)
26 25155 bp 69.70 48.78 94.44
cn_combo_scaffold_5026 XAN48_69
Genus: Pseudoxanthomonas (54.55%)
11 11704 bp 69.53 52.06 94.48
cn_combo_scaffold_7628 XAN48_145
Genus: Lysobacter (62.5%)
8 8090 bp 71.40 55.06 94.49
cn_combo_scaffold_3917 XAN48_42
Class: Gammaproteobacteria (57.14%)
28 26056 bp 63.23 46.92 94.50
cn_combo_scaffold_12778 XAN48_308
Genus: Lysobacter (62.5%)
8 5624 bp 71.34 47.64 94.59
cn_combo_scaffold_6175 XAN48_107
Species: Pseudoxanthomonas suwonensis (55.56%)
9 10401 bp 60.34 40.55 94.64
cn_combo_scaffold_5730 XAN48_94
Order: Xanthomonadales (66.67%)
12 12899 bp 71.37 50.42 94.64
cn_combo_scaffold_12570 XAN48_300
Genus: Lysobacter (62.5%)
8 5096 bp 68.01 48.25 94.66
cn_combo_scaffold_3866 XAN48_38
Class: Gammaproteobacteria (64.29%)
14 15011 bp 67.04 47.75 94.69
cn_combo_scaffold_12575 XAN48_301
Order: Xanthomonadales (87.5%)
8 5094 bp 68.81 51.37 94.70
cn_combo_scaffold_11751 XAN48_268
Genus: Lysobacter (50%)
6 5648 bp 71.41 50.73 94.71
cn_combo_scaffold_4787 XAN48_61
Genus: Lysobacter (50%)
14 12300 bp 70.41 51.07 94.71
cn_combo_scaffold_4176 XAN48_49
Order: Xanthomonadales (81.25%)
16 16244 bp 67.85 59.28 94.72
cn_combo_scaffold_7688 XAN48_146
Genus: Lysobacter (62.5%)
8 8021 bp 70.48 50.44 94.74
cn_combo_scaffold_10293 XAN48_221
Order: Xanthomonadales (80%)
5 6608 bp 60.74 8.55 94.75
cn_combo_scaffold_8838 XAN48_177
Genus: Lysobacter (66.67%)
9 7120 bp 69.30 44.93 94.76
cn_combo_scaffold_7124 XAN48_129
Order: Xanthomonadales (66.67%)
9 8577 bp 70.26 49.34 94.79
cn_combo_scaffold_12771 XAN48_306
Order: Xanthomonadales (62.5%)
8 5625 bp 69.96 45.05 94.79
cn_combo_scaffold_10893 XAN48_241
Order: Xanthomonadales (61.54%)
13 11020 bp 70.45 62.51 94.82
cn_combo_scaffold_4301 XAN48_52
Genus: Arenimonas (54.55%)
11 13609 bp 69.89 53.88 94.83
cn_combo_scaffold_5171 XAN48_78
Species: Xanthomonas vesicatoria (54.55%)
11 11405 bp 61.32 24.14 94.88
cn_combo_scaffold_7121 XAN48_130
Order: Xanthomonadales (77.78%)
9 8581 bp 71.67 51.17 94.88
cn_combo_scaffold_7112 XAN48_128
Species: Xanthomonas euvesicatoria (66.67%)
15 12605 bp 63.59 10.94 94.89
cn_combo_scaffold_6708 XAN48_123
Genus: Lysobacter (55.56%)
9 9073 bp 70.20 53.52 94.90
cn_combo_scaffold_8505 XAN48_167
Genus: Lysobacter (60%)
5 7350 bp 71.73 49.93 94.90
cn_combo_scaffold_11374 XAN48_254
Genus: Lysobacter (50%)
6 5595 bp 70.44 47.65 94.91
cn_combo_scaffold_14390 XAN48_323
Order: Xanthomonadales (71.43%)
7 6053 bp 66.83 47.17 94.91
cn_combo_scaffold_5592 XAN48_88
Order: Xanthomonadales (75%)
20 14809 bp 70.36 49.23 94.92
cn_combo_scaffold_10039 XAN48_216
Genus: Lysobacter (62.5%)
8 6294 bp 71.81 46.77 94.95
cn_combo_scaffold_7721 XAN48_150
Genus: Lysobacter (50%)
12 12903 bp 71.21 48.70 94.95
cn_combo_scaffold_9527 XAN48_199
Genus: Lysobacter (76.92%)
13 11718 bp 69.71 46.89 94.98
cn_combo_scaffold_8253 XAN48_164
Genus: Lysobacter (60%)
10 7555 bp 69.16 48.44 95.02
cn_combo_scaffold_11422 XAN48_257
Genus: Lysobacter (77.78%)
9 5575 bp 68.59 48.61 95.03
cn_combo_scaffold_5151 XAN48_77
Species: Hydrocarboniphaga effusa (71.43%)
7 11450 bp 68.58 47.01 95.08
cn_combo_scaffold_8118 XAN48_161
Genus: Lysobacter (62.5%)
8 7660 bp 69.77 52.73 95.09
cn_combo_scaffold_6294 XAN48_111
Genus: Lysobacter (70%)
10 9587 bp 69.06 47.56 95.13
Displaying items 201-250 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.