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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 51-100 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_9958 XAN48_212
Order: Xanthomonadales (66.67%)
6 6341 bp 68.63 48.67 87.95
cn_combo_scaffold_2704 XAN48_16
Species: Pseudoxanthomonas suwonensis (50%)
30 26347 bp 66.39 55.78 87.96
cn_combo_scaffold_7997 XAN48_154
Genus: Lysobacter (50%)
10 7765 bp 67.11 52.76 88.05
cn_combo_scaffold_12199 XAN48_293
Order: Xanthomonadales (100%)
5 5235 bp 69.28 50.01 88.08
cn_combo_scaffold_11583 XAN48_341a
Order: Xanthomonadales (55.56%)
9 5496 bp 69.80 59.90 88.10
cn_combo_scaffold_16609 XAN48_332
Genus: Lysobacter (66.67%)
6 5050 bp 69.54 47.66 88.40
cn_combo_scaffold_23348 XAN48_342b
Order: Xanthomonadales (71.43%)
7 5076 bp 69.41 52.40 88.71
cn_combo_scaffold_9142 XAN48_184
Order: Xanthomonadales (62.5%)
8 6880 bp 68.87 50.54 88.74
cn_combo_scaffold_11905 XAN48_279
Genus: Lysobacter (60%)
15 10291 bp 68.95 52.02 88.88
cn_combo_scaffold_10520 XAN48_229
Order: Xanthomonadales (85.71%)
7 6023 bp 69.07 44.84 88.96
cn_combo_scaffold_16651 XAN48_333
Genus: Lysobacter (57.14%)
7 5020 bp 69.64 50.12 88.96
cn_combo_scaffold_10538 XAN48_231
Order: Xanthomonadales (100%)
7 6014 bp 69.21 51.13 88.99
cn_combo_scaffold_4339 XAN48_53
Order: Xanthomonadales (58.33%)
24 23082 bp 69.09 46.69 89.04
cn_combo_scaffold_3820 XAN48_343b
Genus: Lysobacter (54.9%)
51 56078 bp 68.06 82.27 89.07
cn_combo_scaffold_21459 XAN48_341b
Species: Lysobacter dokdonensis (60%)
5 5546 bp 68.99 54.76 89.09
cn_combo_scaffold_16497 XAN48_331
Class: Gammaproteobacteria (71.43%)
7 7449 bp 61.42 66.73 89.22
cn_combo_scaffold_3015 XAN48_21
Order: Xanthomonadales (57.14%)
21 18787 bp 65.97 50.43 89.28
cn_combo_scaffold_10024 XAN48_215
Genus: Lysobacter (50%)
8 6302 bp 70.18 54.65 89.40
cn_combo_scaffold_13899 XAN48_316
Domain: Bacteria (60%)
5 5274 bp 60.56 8.13 89.48
cn_combo_scaffold_11379 XAN48_255
Species: Lysobacter concretionis (50%)
6 5593 bp 67.55 52.10 89.52
cn_combo_scaffold_9143 XAN48_185
Genus: Lysobacter (54.55%)
11 9923 bp 69.40 51.58 89.54
cn_combo_scaffold_5482 XAN48_343a
Order: Xanthomonadales (66.67%)
15 10848 bp 68.68 47.18 89.63
cn_combo_scaffold_11058 XAN48_247
Order: Xanthomonadales (55.56%)
9 5745 bp 67.75 45.48 89.71
cn_combo_scaffold_9937 XAN48_211
Order: Xanthomonadales (77.78%)
9 8556 bp 68.96 51.12 89.76
cn_combo_scaffold_9481 XAN48_196
Genus: Lysobacter (66.67%)
6 6634 bp 65.03 46.28 89.90
cn_combo_scaffold_9211 XAN48_187
Order: Xanthomonadales (77.78%)
9 6831 bp 70.12 47.18 89.94
cn_combo_scaffold_11616 XAN48_263
Genus: Xanthomonas (57.14%)
7 5482 bp 69.99 53.50 90.02
cn_combo_scaffold_4891 XAN48_64
Class: Gammaproteobacteria (50%)
24 19081 bp 63.96 32.81 90.07
cn_combo_scaffold_11997 XAN48_283
Order: Xanthomonadales (66.67%)
6 5313 bp 61.32 10.20 90.18
cn_combo_scaffold_7313 XAN48_135
Order: Xanthomonadales (75%)
8 8385 bp 69.53 46.07 90.20
cn_combo_scaffold_9234 XAN48_188
Order: Xanthomonadales (66.67%)
12 8959 bp 70.80 51.56 90.24
cn_combo_scaffold_7494 XAN48_141
Order: Xanthomonadales (64.29%)
14 17439 bp 70.74 54.43 90.25
cn_combo_scaffold_9490 XAN48_197
Genus: Lysobacter (66.67%)
6 6631 bp 65.63 45.72 90.26
cn_combo_scaffold_9118 XAN48_181
Order: Xanthomonadales (55.56%)
9 6898 bp 68.85 48.52 90.27
cn_combo_scaffold_4290 XAN48_51
Order: Xanthomonadales (73.68%)
19 13656 bp 68.63 51.93 90.38
cn_combo_scaffold_10461 XAN48_227
Order: Xanthomonadales (66.67%)
6 6054 bp 65.33 45.03 90.40
cn_combo_scaffold_6677 XAN48_122
Order: Xanthomonadales (90%)
10 9114 bp 68.44 56.37 90.45
cn_combo_scaffold_9961 XAN48_213
Order: Xanthomonadales (62.5%)
8 6571 bp 68.91 50.81 90.49
cn_combo_scaffold_4991 XAN48_66
Order: Xanthomonadales (72.73%)
11 11766 bp 69.65 46.70 90.54
cn_combo_scaffold_7449 XAN48_139
Genus: Lysobacter (55.56%)
9 8666 bp 71.00 52.73 90.56
cn_combo_scaffold_9230 XAN48_189
Order: Xanthomonadales (84.21%)
19 14597 bp 70.24 51.96 90.61
cn_combo_scaffold_16268 XAN48_329
Class: Gammaproteobacteria (84.62%)
13 10936 bp 69.18 49.37 90.61
cn_combo_scaffold_1420 XAN48_3
Order: Xanthomonadales (78.05%)
41 36368 bp 69.21 48.78 90.62
cn_combo_scaffold_12984 XAN48_310
Order: Xanthomonadales (53.85%)
13 12625 bp 70.37 46.61 90.68
cn_combo_scaffold_10831 XAN48_238
Order: Xanthomonadales (70%)
10 9970 bp 72.58 48.09 90.69
cn_combo_scaffold_4508 XAN48_57
Order: Xanthomonadales (62.5%)
16 13023 bp 67.72 54.48 90.72
cn_combo_scaffold_8672 XAN48_173
Genus: Lysobacter (66.67%)
9 10761 bp 68.55 51.83 90.80
cn_combo_scaffold_5136 XAN48_75
Order: Xanthomonadales (57.14%)
14 11985 bp 67.48 52.72 90.89
cn_combo_scaffold_5085 XAN48_74
Order: Xanthomonadales (53.85%)
13 11585 bp 57.10 42.70 90.92
cn_combo_scaffold_2082 XAN48_8
Order: Xanthomonadales (70.59%)
17 26316 bp 68.25 55.60 90.94
Displaying items 51-100 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.