ggKbase home page

L1_007_000M1_scaffold_30

Search features with annotation key words

Displaying items 1-30 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_30_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(315..1457)
DNA (1143bp) protein (381aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Queuine tRNA-ribosyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0T1_9FIRM
L1_007_000M1_scaffold_30_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1477..1848)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67019.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L1_007_000M1_scaffold_30_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1838..2959)
DNA (1122bp) protein (374aa)
Acyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4C5_9FIRM
Acyltransferase {ECO:0000313|EMBL:CDC67020.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L1_007_000M1_scaffold_30_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3028..4080)
DNA (1053bp) protein (351aa)
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGQ3_9FIRM
L1_007_000M1_scaffold_30_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4662..5744
DNA (1083bp) protein (361aa)
asd; Aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8E2_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDC67022.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_30_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5781..6671
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
dapA; Dihydrodipicolinate synthase (EC:4.3.3.7)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0T5_9FIRM
L1_007_000M1_scaffold_30_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6823..7581
DNA (759bp) protein (253aa)
dapB; Dihydrodipicolinate reductase (EC:1.17.1.8)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBH6_9FIRM
L1_007_000M1_scaffold_30_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7725..9935)
DNA (2211bp) protein (737aa)
Transglutaminase-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4C8_9FIRM
Transglutaminase-like protein {ECO:0000313|EMBL:CDC67025.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
transglutaminase domain-containing protein
L1_007_000M1_scaffold_30_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9948..11108)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TGQ7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05999.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11122..12060)
DNA (939bp) protein (313aa)
moxR; MoxR-like ATPase (EC:3.6.3.-)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8E4_9FIRM
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:CDC67027.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_30_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12029..13300)
DNA (1272bp) protein (424aa)
rumA2; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCO05997.1}; EC=2.1.1.- {ECO:0000313|EMBL:CCO05997.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0T8_9FIRM
L1_007_000M1_scaffold_30_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13705..14739)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Q0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66485.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_30_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17190..17480)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CI59_9FIRM
cas2; CRISPR-associated protein Cas2
L1_007_000M1_scaffold_30_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17492..18514)
DNA (1023bp) protein (341aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2X7_9FIRM
cas1; CRISPR-associated endonuclease Cas1
L1_007_000M1_scaffold_30_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18507..19187)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67799.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
cas4; CRISPR-associated protein Cas4
L1_007_000M1_scaffold_30_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19187..20053)
DNA (867bp) protein (289aa)
CRISPR-associated protein Csd2 family n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CLV2_9FIRM
cas_csd2; CRISPR-associated protein, Csd2 family
CRISPR-associated protein, Csd2 family {ECO:0000313|EMBL:CCO05992.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20071..21864)
DNA (1794bp) protein (598aa)
Crispr-protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFR2_9FIRM
Crispr-protein {ECO:0000313|EMBL:CDC66731.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
cas_csd1; CRISPR-associated protein, Csd1 family
L1_007_000M1_scaffold_30_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21858..22577)
DNA (720bp) protein (240aa)
CRISPR-associated protein Cas5 Dvulg subtype n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3F4_9FIRM
cas5; CRISPR-associated protein Cas5, Dvulg subtype
CRISPR-associated protein Cas5, Dvulg subtype {ECO:0000313|EMBL:CCO05990.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22884..25178)
DNA (2295bp) protein (765aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAL7_9FIRM
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:CCO05989.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
cas3; CRISPR-associated helicase Cas3
L1_007_000M1_scaffold_30_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25351..26598
DNA (1248bp) protein (416aa)
Bacterial capsule synthesis protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZS1_9FIRM
capA; Capsule biosynthesis protein CapA
Bacterial capsule synthesis protein {ECO:0000313|EMBL:CDC66698.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_30_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26946..29288
DNA (2343bp) protein (781aa)
Glycoside Hydrolase Family 31 protein {ECO:0000313|EMBL:CCO05987.1}; EC=3.2.1.- {ECO:0000313|EMBL:CCO05987.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glycoside Hydrolase Family 31 protein (EC:3.2.1.-)
Glycosyl hydrolase family 31 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7B3_9FIRM
L1_007_000M1_scaffold_30_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29446..29850
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66696.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L1_007_000M1_scaffold_30_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29840..30721
DNA (882bp) protein (294aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3C1_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDC66695.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L1_007_000M1_scaffold_30_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30791..31861)
DNA (1071bp) protein (357aa)
Twitching motility protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAI5_9FIRM
pilT; Twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:CCO05984.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31889..33568)
DNA (1680bp) protein (560aa)
Putative general secretion pathway protein E n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZR7_9FIRM
Type II/IV secretion system protein, ATPase {ECO:0000313|EMBL:CCO05983.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
pilB; Type II/IV secretion system protein, ATPase
L1_007_000M1_scaffold_30_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33728..34552
DNA (825bp) protein (275aa)
pilD; pre-pilin peptidase (EC:3.4.23.43)
Pre-pilin peptidase {ECO:0000313|EMBL:CCO05982.1}; EC=3.4.23.43 {ECO:0000313|EMBL:CCO05982.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Bacterial peptidase A24 N-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7A8_9FIRM
L1_007_000M1_scaffold_30_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34680..36554)
DNA (1875bp) protein (625aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66691.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pilin related protein
L1_007_000M1_scaffold_30_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36573..37382)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3B6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66690.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pilin related protein
L1_007_000M1_scaffold_30_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37400..39604)
DNA (2205bp) protein (735aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66689.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative secreted protein
L1_007_000M1_scaffold_30_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39752..40462)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66688.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative secreted protein
Displaying items 1-30 of 156 in total

View Taxonomy