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L1_007_000M1_scaffold_30

Search features with annotation key words

Displaying items 31-60 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_30_31
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(40465..41949)
DNA (1485bp) protein (495aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7A3_9FIRM
pilM; type IV pilus assembly protein PilM
Conserved domain protein {ECO:0000313|EMBL:CDC66687.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_30_32
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(42052..43248)
DNA (1197bp) protein (399aa)
Type II secretion system protein F domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFL9_9FIRM
pilC; putative type IV pilus assembly protein PilC
Putative type IV pilus assembly protein PilC {ECO:0000313|EMBL:CCO05976.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_33
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43536..44102)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66685.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L1_007_000M1_scaffold_30_34
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44191..46227)
DNA (2037bp) protein (679aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CCO05974.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCO05974.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAH5_9FIRM
L1_007_000M1_scaffold_30_35
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(46411..48039)
DNA (1629bp) protein (543aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Z1_9FIRM
L1_007_000M1_scaffold_30_36
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

48404..49786
DNA (1383bp) protein (461aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA34_9FIRM
cell envelope-related transcriptional regulator
Cell envelope-related transcriptional regulator {ECO:0000313|EMBL:CCO05972.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_37
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

49953..50282
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZG3_9FIRM
csoR; Possible Copper-sensing transcriptional repressor CsoR
Possible Copper-sensing transcriptional repressor CsoR {ECO:0000313|EMBL:CCO05971.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_38
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

50297..52819
DNA (2523bp) protein (841aa)
copA; Cu2+-exporting ATPase (EC:3.6.3.4)
Copper-exporting ATPase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Z1_9FIRM
Copper-exporting ATPase {ECO:0000313|EMBL:CDC66537.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_30_39
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(52732..53220)
DNA (489bp) protein (163aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD34_9FIRM
CRISPR-associated protein, Cas1 family
L1_007_000M1_scaffold_30_40
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53220..53843)
DNA (624bp) protein (208aa)
CRISPR system CASCADE complex protein CasE n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWI7_9FIRM
CRISPR system CASCADE complex protein CasE {ECO:0000313|EMBL:ERJ96450.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse3 family
L1_007_000M1_scaffold_30_41
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(53852..54502)
DNA (651bp) protein (217aa)
CRISPR system CASCADE complex protein CasD n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3X4_9FIRM
CRISPR system CASCADE complex protein CasD {ECO:0000313|EMBL:ERJ96449.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cas5e family
L1_007_000M1_scaffold_30_42
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(54508..55584)
DNA (1077bp) protein (359aa)
CRISPR system CASCADE complex protein CasC n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MAX3_9FIRM
CRISPR system CASCADE complex protein CasC {ECO:0000313|EMBL:ERJ96448.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse4 family
L1_007_000M1_scaffold_30_43
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(55581..56153)
DNA (573bp) protein (191aa)
CRISPR system CASCADE complex protein CasB n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KVY0_9FIRM
CRISPR system CASCADE complex protein CasB {ECO:0000313|EMBL:ERJ96447.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse2 family
L1_007_000M1_scaffold_30_44
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(56178..57764)
DNA (1587bp) protein (529aa)
CRISPR system CASCADE complex protein CasA n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD29_9FIRM
CRISPR system CASCADE complex protein CasA {ECO:0000313|EMBL:ERJ96446.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse1 family
L1_007_000M1_scaffold_30_45
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(57761..60412)
DNA (2652bp) protein (884aa)
CRISPR-associated helicase Cas3 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3Y2_9FIRM
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:ERJ96459.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated helicase Cas3
L1_007_000M1_scaffold_30_46
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(60588..63065)
DNA (2478bp) protein (826aa)
Two-component system sensor histidine kinase (EC:2.7.3.-)
Histidine kinase A domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFA7_9FIRM
Histidine kinase A domain protein {ECO:0000313|EMBL:CDC66536.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_30_47
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(63040..63747)
DNA (708bp) protein (236aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y6_9FIRM
Two-component system transcriptional regulator
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCO05968.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_48
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(63925..65352)
DNA (1428bp) protein (476aa)
ABC transporter solute-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA29_9FIRM
extracellular solute-binding protein
Extracellular solute-binding protein {ECO:0000313|EMBL:CCO05967.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_49
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(65590..67050)
DNA (1461bp) protein (487aa)
Amino acid carrier protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZG0_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:CDC66533.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
agcS; alanine and/or glycine in symporter (with Na+ and or H+)
L1_007_000M1_scaffold_30_50
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(67138..68133)
DNA (996bp) protein (332aa)
Putative catabolite control protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Z0_9FIRM
Putative catabolite control protein A {ECO:0000313|EMBL:CDC66532.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Transcriptional regulator, LacI family
L1_007_000M1_scaffold_30_51
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

68346..68627
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFA4_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05964.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_52
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(68697..69707)
DNA (1011bp) protein (337aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y3_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDC66530.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L1_007_000M1_scaffold_30_53
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(69919..71007)
DNA (1089bp) protein (363aa)
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:CCO05962.1};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Aspartate carbamoyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA25_9FIRM
L1_007_000M1_scaffold_30_54
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(71117..72214)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66528.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L1_007_000M1_scaffold_30_55
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(72235..73581)
DNA (1347bp) protein (449aa)
MBOAT family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Y5_9FIRM
MBOAT family protein {ECO:0000313|EMBL:CDC66527.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative alginate O-acetyltransferase
L1_007_000M1_scaffold_30_56
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(73616..74239)
DNA (624bp) protein (208aa)
RNAse M5 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFA0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05959.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L1_007_000M1_scaffold_30_57
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(74243..75301)
DNA (1059bp) protein (353aa)
holA; DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:CCO05958.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CCO05958.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
DNA polymerase III delta subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y0_9FIRM
L1_007_000M1_scaffold_30_58
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(75270..77270)
DNA (2001bp) protein (667aa)
ComEC/Rec2-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA21_9FIRM
Possible DNA uptake protein {ECO:0000313|EMBL:CCO05957.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
possible DNA uptake protein
L1_007_000M1_scaffold_30_59
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(77331..77672)
DNA (342bp) protein (114aa)
Histidine triad domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZF3_9FIRM
hypothetical protein
Histidine triad domain protein {ECO:0000313|EMBL:CDC66523.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L1_007_000M1_scaffold_30_60
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(77735..80392)
DNA (2658bp) protein (886aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Y0_9FIRM
Displaying items 31-60 of 156 in total

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