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NECEvent2014_8_1_Clostridium_paraputrificum_29_36

NECEvent2014_8_1_Clostridium_30_43
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

rpS3 100% to Clostridium paraputrificum

Displaying items 1-50 of 233 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_3 178_001_scaffold_3
Genus: Clostridium (66.39%)
122 114454 bp 29.81 44.84 88.23
NECEvent2014_8_1_scaffold_2 178_001_scaffold_2
Genus: Clostridium (90%)
110 117974 bp 30.32 46.28 88.96
NECEvent2014_8_1_scaffold_14 178_001_scaffold_14
Genus: Clostridium (92.59%)
81 76114 bp 30.50 54.65 91.49
NECEvent2014_8_1_scaffold_12 178_001_scaffold_12
Genus: Clostridium (86.25%)
80 78051 bp 30.06 41.42 91.08
NECEvent2014_8_1_scaffold_9 178_001_scaffold_9
Genus: Clostridium (71.43%)
77 83165 bp 29.96 40.30 90.35
NECEvent2014_8_1_scaffold_44 178_001_scaffold_44
Genus: Clostridium (61.33%)
75 47181 bp 29.43 42.24 92.03
NECEvent2014_8_1_scaffold_18 178_001_scaffold_18
Genus: Clostridium (89.33%)
75 70342 bp 30.13 44.72 90.88
NECEvent2014_8_1_scaffold_15 178_001_scaffold_15
Genus: Clostridium (50%)
74 80087 bp 29.75 42.04 88.80
NECEvent2014_8_1_scaffold_13 178_001_scaffold_13
Genus: Clostridium (71.83%)
71 77132 bp 30.19 43.07 88.88
NECEvent2014_8_1_scaffold_16 178_001_scaffold_16
Genus: Clostridium (98.57%)
70 72650 bp 30.88 52.64 93.94
NECEvent2014_8_1_scaffold_17 178_001_scaffold_17
Genus: Clostridium (86.57%)
67 72539 bp 30.45 48.96 89.89
NECEvent2014_8_1_scaffold_21 178_001_scaffold_21
Genus: Clostridium (95.31%)
64 66492 bp 30.36 48.61 91.67
NECEvent2014_8_1_scaffold_37 178_001_scaffold_37
Genus: Clostridium (60.94%)
64 51574 bp 29.77 41.64 85.16
NECEvent2014_8_1_scaffold_28 178_001_scaffold_28
Genus: Clostridium (75.81%)
62 57579 bp 29.07 33.19 89.19
NECEvent2014_8_1_scaffold_23 178_001_scaffold_23
Genus: Clostridium (93.33%)
60 61432 bp 29.70 39.21 89.77
NECEvent2014_8_1_scaffold_33 178_001_scaffold_33
Genus: Clostridium (94.44%)
54 52816 bp 29.67 40.84 91.93
NECEvent2014_8_1_scaffold_30 178_001_scaffold_30
Genus: Clostridium (80.85%)
47 56182 bp 31.16 59.57 90.81
NECEvent2014_8_1_scaffold_43 178_001_scaffold_43
Genus: Clostridium (77.78%)
45 48051 bp 29.61 36.30 91.70
NECEvent2014_8_1_scaffold_50 178_001_scaffold_50
Genus: Clostridium (86.67%)
45 43463 bp 29.55 33.09 91.62
NECEvent2014_8_1_scaffold_51 178_001_scaffold_51
Genus: Clostridium (92.86%)
42 42556 bp 29.50 34.85 87.65
NECEvent2014_8_1_scaffold_139 178_001_scaffold_139
Genus: Clostridium (100%)
37 21027 bp 33.50 105.84 87.33
NECEvent2014_8_1_scaffold_66 178_001_scaffold_66
Genus: Clostridium (82.86%)
35 34731 bp 29.92 42.13 88.75
NECEvent2014_8_1_scaffold_56 178_001_scaffold_56
Genus: Clostridium (76.47%)
34 38987 bp 30.13 46.98 93.23
NECEvent2014_8_1_scaffold_91 178_001_scaffold_91
Genus: Clostridium (85.29%)
34 27967 bp 29.32 37.59 94.48
NECEvent2014_8_1_scaffold_68 178_001_scaffold_68
Genus: Clostridium (72.73%)
33 34185 bp 29.59 37.68 91.65
NECEvent2014_8_1_scaffold_64 178_001_scaffold_64
Genus: Clostridium (58.06%)
31 35424 bp 29.43 35.68 87.09
NECEvent2014_8_1_scaffold_69 178_001_scaffold_69
Genus: Clostridium (70.97%)
31 33371 bp 29.77 36.12 88.38
NECEvent2014_8_1_scaffold_78 178_001_scaffold_78
Genus: Clostridium (58.06%)
31 30303 bp 29.62 35.35 90.09
NECEvent2014_8_1_scaffold_85 178_001_scaffold_85
Order: Clostridiales (61%)
31 29418 bp 35.96 89.42 88.22
NECEvent2014_8_1_scaffold_89 178_001_scaffold_89
Genus: Clostridium (74.19%)
31 28608 bp 28.99 34.01 90.08
NECEvent2014_8_1_scaffold_92 178_001_scaffold_92
Genus: Clostridium (92.86%)
28 27764 bp 31.55 61.64 87.22
NECEvent2014_8_1_scaffold_145 178_001_scaffold_145
Genus: Clostridium (88.89%)
27 20370 bp 29.81 35.88 92.00
NECEvent2014_8_1_scaffold_99 178_001_scaffold_99
Genus: Clostridium (84%)
25 25869 bp 28.69 31.69 86.26
NECEvent2014_8_1_scaffold_108 178_001_scaffold_108
Genus: Clostridium (92%)
25 25303 bp 30.28 49.67 90.29
NECEvent2014_8_1_scaffold_113 178_001_scaffold_113
Genus: Clostridium (52%)
25 24581 bp 28.30 32.28 87.57
NECEvent2014_8_1_scaffold_117 178_001_scaffold_117
Genus: Clostridium (92%)
25 24278 bp 29.83 37.42 86.91
NECEvent2014_8_1_scaffold_86 178_001_scaffold_86
Genus: Clostridium (79.17%)
24 29087 bp 29.87 38.55 91.42
NECEvent2014_8_1_scaffold_88 178_001_scaffold_88
Genus: Clostridium (87.5%)
24 28620 bp 32.13 67.74 89.88
NECEvent2014_8_1_scaffold_201 178_001_scaffold_201
Genus: Clostridium (54.17%)
24 16412 bp 29.06 31.75 79.04
NECEvent2014_8_1_scaffold_121 178_001_scaffold_121
Genus: Clostridium (91.3%)
23 23995 bp 29.83 42.12 90.97
NECEvent2014_8_1_scaffold_188 178_001_scaffold_188
Genus: Clostridium (91.3%)
23 17506 bp 31.05 38.14 93.81
NECEvent2014_8_1_scaffold_115 178_001_scaffold_115
Genus: Clostridium (100%)
22 24431 bp 30.58 52.95 88.90
NECEvent2014_8_1_scaffold_150 178_001_scaffold_150
Genus: Clostridium (90.91%)
22 19772 bp 29.85 43.69 84.65
NECEvent2014_8_1_scaffold_76 178_001_scaffold_76
Genus: Clostridium (90.48%)
21 30981 bp 30.43 45.47 91.80
NECEvent2014_8_1_scaffold_82 178_001_scaffold_82
Genus: Clostridium (90.48%)
21 29913 bp 30.23 50.48 89.17
NECEvent2014_8_1_scaffold_164 178_001_scaffold_164
Genus: Clostridium (85.71%)
21 19082 bp 28.68 28.77 88.45
NECEvent2014_8_1_scaffold_167 178_001_scaffold_167
Genus: Clostridium (85.71%)
21 18849 bp 28.87 31.55 92.30
NECEvent2014_8_1_scaffold_175 178_001_scaffold_175
Genus: Clostridium (76.19%)
21 18169 bp 31.41 47.43 93.04
NECEvent2014_8_1_scaffold_131 178_001_scaffold_131
Genus: Clostridium (90%)
20 22663 bp 29.93 44.71 90.72
NECEvent2014_8_1_scaffold_183 178_001_scaffold_183
Genus: Clostridium (75%)
20 17871 bp 30.69 46.54 92.13
Displaying items 1-50 of 233 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.