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NECEvent2014_8_1_Clostridium_paraputrificum_29_36

NECEvent2014_8_1_Clostridium_30_43
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

rpS3 100% to Clostridium paraputrificum

Displaying items 51-100 of 233 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_224 178_001_scaffold_224
Genus: Clostridium (85%)
20 15469 bp 30.36 53.40 91.45
NECEvent2014_8_1_scaffold_238 178_001_scaffold_238
Genus: Clostridium (90%)
20 15058 bp 29.33 37.10 88.56
NECEvent2014_8_1_scaffold_250 178_001_scaffold_250
Genus: Clostridium (100%)
19 14429 bp 27.81 21.85 85.10
NECEvent2014_8_1_scaffold_141 178_001_scaffold_141
Genus: Clostridium (100%)
18 20622 bp 30.06 40.78 88.70
NECEvent2014_8_1_scaffold_158 178_001_scaffold_158
Genus: Clostridium (66.67%)
18 19341 bp 28.69 33.12 90.37
NECEvent2014_8_1_scaffold_170 178_001_scaffold_170
Genus: Clostridium (72.22%)
18 18621 bp 30.88 63.45 87.66
NECEvent2014_8_1_scaffold_194 178_001_scaffold_194
Genus: Clostridium (61.11%)
18 17093 bp 30.60 37.06 85.72
NECEvent2014_8_1_scaffold_243 178_001_scaffold_243
Genus: Clostridium (77.78%)
18 14925 bp 28.40 27.02 87.26
NECEvent2014_8_1_scaffold_168 178_001_scaffold_168
Genus: Clostridium (70.59%)
17 18834 bp 27.75 33.58 90.30
NECEvent2014_8_1_scaffold_181 178_001_scaffold_181
Genus: Clostridium (94.12%)
17 17886 bp 30.53 56.92 89.90
NECEvent2014_8_1_scaffold_206 178_001_scaffold_206
Genus: Clostridium (88.24%)
17 16243 bp 29.02 31.63 90.28
NECEvent2014_8_1_scaffold_227 178_001_scaffold_227
Genus: Clostridium (94.12%)
17 15377 bp 28.69 29.63 92.57
NECEvent2014_8_1_scaffold_229 178_001_scaffold_229
Genus: Clostridium (70.59%)
17 15272 bp 28.68 31.27 84.76
NECEvent2014_8_1_scaffold_288 178_001_scaffold_288
Genus: Clostridium (81.25%)
16 14066 bp 31.57 78.60 91.29
NECEvent2014_8_1_scaffold_456 178_001_scaffold_456
Genus: Clostridium (62.5%)
16 9236 bp 29.55 35.40 83.09
NECEvent2014_8_1_scaffold_295 178_001_scaffold_295
Phylum: Firmicutes (86.67%)
15 12881 bp 27.21 25.49 72.69
NECEvent2014_8_1_scaffold_93 178_001_scaffold_93
Genus: Clostridium (93.33%)
15 27654 bp 29.79 36.93 94.47
NECEvent2014_8_1_scaffold_409 178_001_scaffold_409
Genus: Clostridium (66.67%)
15 9965 bp 27.90 26.73 80.02
NECEvent2014_8_1_scaffold_186 178_001_scaffold_186
Genus: Clostridium (86.67%)
15 17535 bp 30.28 45.03 90.25
NECEvent2014_8_1_scaffold_232 178_001_scaffold_232
Genus: Clostridium (73.33%)
15 15172 bp 30.50 59.73 88.69
NECEvent2014_8_1_scaffold_346 178_001_scaffold_346
Genus: Clostridium (85.71%)
14 11443 bp 28.24 24.37 86.25
NECEvent2014_8_1_scaffold_192 178_001_scaffold_192
Species: Clostridium baratii (78.57%)
14 17271 bp 31.10 53.94 94.35
NECEvent2014_8_1_scaffold_212 178_001_scaffold_212
Genus: Clostridium (78.57%)
14 16012 bp 29.76 45.22 92.20
NECEvent2014_8_1_scaffold_216 178_001_scaffold_216
Genus: Clostridium (85.71%)
14 15832 bp 29.43 39.42 88.42
NECEvent2014_8_1_scaffold_246 178_001_scaffold_246
Genus: Clostridium (64.29%)
14 14753 bp 28.86 31.20 89.64
NECEvent2014_8_1_scaffold_259 178_001_scaffold_259
Genus: Clostridium (78.57%)
14 14223 bp 29.09 36.91 94.18
NECEvent2014_8_1_scaffold_262 178_001_scaffold_262
Genus: Clostridium (64.29%)
14 13985 bp 30.75 56.93 88.68
NECEvent2014_8_1_scaffold_135 178_001_scaffold_135
Genus: Clostridium (61.54%)
13 21313 bp 29.98 46.34 93.52
NECEvent2014_8_1_scaffold_193 178_001_scaffold_193
Genus: Clostridium (92.31%)
13 17216 bp 29.02 32.40 94.12
NECEvent2014_8_1_scaffold_245 178_001_scaffold_245
Genus: Clostridium (92.31%)
13 14769 bp 34.46 132.02 88.95
NECEvent2014_8_1_scaffold_260 178_001_scaffold_260
Genus: Clostridium (69.23%)
13 14060 bp 28.80 31.62 94.72
NECEvent2014_8_1_scaffold_286 178_001_scaffold_286
Genus: Clostridium (58.33%)
12 13108 bp 29.52 37.96 85.23
NECEvent2014_8_1_scaffold_293 178_001_scaffold_293
Genus: Clostridium (100%)
12 12925 bp 30.00 40.57 91.40
NECEvent2014_8_1_scaffold_348 178_001_scaffold_348
Genus: Clostridium (83.33%)
12 11431 bp 29.68 30.99 93.61
NECEvent2014_8_1_scaffold_351 178_001_scaffold_351
Genus: Clostridium (100%)
12 11355 bp 31.05 50.74 93.21
NECEvent2014_8_1_scaffold_377 178_001_scaffold_377
Genus: Clostridium (66.67%)
12 10755 bp 29.63 43.61 91.41
NECEvent2014_8_1_scaffold_401 178_001_scaffold_401
Genus: Clostridium (91.67%)
12 10113 bp 27.88 25.88 84.07
NECEvent2014_8_1_scaffold_405 178_001_scaffold_405
Genus: Clostridium (75%)
12 10040 bp 29.38 31.54 92.72
NECEvent2014_8_1_scaffold_165 178_001_scaffold_165
Order: Clostridiales (66.67%)
12 19055 bp 30.41 46.34 89.79
NECEvent2014_8_1_scaffold_421 178_001_scaffold_421
Genus: Clostridium (83.33%)
12 9798 bp 29.94 40.69 91.21
NECEvent2014_8_1_scaffold_210 178_001_scaffold_210
Genus: Clostridium (83.33%)
12 16109 bp 30.34 40.45 92.31
NECEvent2014_8_1_scaffold_222 178_001_scaffold_222
Genus: Clostridium (91.67%)
12 15575 bp 29.79 33.53 92.86
NECEvent2014_8_1_scaffold_225 178_001_scaffold_225
Order: Clostridiales (91.67%)
12 15463 bp 30.16 36.32 90.16
NECEvent2014_8_1_scaffold_242 178_001_scaffold_242
Genus: Clostridium (100%)
12 14939 bp 30.49 42.03 92.13
NECEvent2014_8_1_scaffold_252 178_001_scaffold_252
Genus: Clostridium (50%)
12 14360 bp 30.35 50.31 87.93
NECEvent2014_8_1_scaffold_598 178_001_scaffold_598
Genus: Clostridium (72.73%)
11 7538 bp 28.04 30.72 90.54
NECEvent2014_8_1_scaffold_365 178_001_scaffold_365
Genus: Clostridium (54.55%)
11 11070 bp 28.47 32.52 76.40
NECEvent2014_8_1_scaffold_389 178_001_scaffold_389
Order: Clostridiales (81.82%)
11 10475 bp 30.43 45.15 87.65
NECEvent2014_8_1_scaffold_396 178_001_scaffold_396
Genus: Clostridium (100%)
11 10209 bp 27.60 28.62 86.81
NECEvent2014_8_1_scaffold_408 178_001_scaffold_408
Genus: Clostridium (90.91%)
11 9987 bp 32.21 91.21 88.83
Displaying items 51-100 of 233 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.