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NECEvent2014_8_3_Clostridium_perfringens_28_18

NECEvent2014_8_3_Clostridium_perfringens_28_20
In projects: NECEvent2014_8_3

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 1-50 of 278 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_3_scaffold_4312 178_003_scaffold_4312 2 1231 bp 52.23 1674.37 5.85
NECEvent2014_8_3_scaffold_4769 178_003_scaffold_4769
Species: Clostridium perfringens (50%)
2 1054 bp 27.89 75.28 93.64
NECEvent2014_8_3_scaffold_4662 178_003_scaffold_4662
Species: Clostridium perfringens (100%)
1 1086 bp 29.37 70.86 95.30
NECEvent2014_8_3_scaffold_4365 178_003_scaffold_4365
Species: Clostridium perfringens (100%)
1 1211 bp 39.47 62.18 99.83
NECEvent2014_8_3_scaffold_4149 178_003_scaffold_4149
Species: Clostridium perfringens (100%)
2 1307 bp 28.92 59.22 80.34
NECEvent2014_8_3_scaffold_451 178_003_scaffold_451
Species: Clostridium perfringens (100%)
17 17473 bp 29.08 36.99 90.00
NECEvent2014_8_3_scaffold_4264 178_003_scaffold_4264
Species: Clostridium perfringens (100%)
1 1255 bp 26.14 36.45 90.36
NECEvent2014_8_3_scaffold_4367 178_003_scaffold_4367
Species: Clostridium perfringens (50%)
2 1211 bp 30.14 34.93 96.37
NECEvent2014_8_3_scaffold_538 178_003_scaffold_538
Species: Clostridium perfringens (100%)
14 14998 bp 34.81 30.96 88.75
NECEvent2014_8_3_scaffold_3890 178_003_scaffold_3890
Species: Clostridium perfringens (66.67%)
3 1420 bp 25.99 30.95 62.32
NECEvent2014_8_3_scaffold_648 178_003_scaffold_648
Species: Clostridium perfringens (100%)
18 12508 bp 25.26 30.86 72.27
NECEvent2014_8_3_scaffold_1666 178_003_scaffold_1666
Species: Clostridium perfringens (100%)
5 4390 bp 29.91 30.75 79.61
NECEvent2014_8_3_scaffold_157 178_003_scaffold_157
Species: Clostridium perfringens (100%)
36 32487 bp 25.64 30.25 91.86
NECEvent2014_8_3_scaffold_1768 178_003_scaffold_1768
Species: Clostridium perfringens (100%)
4 4071 bp 28.49 30.10 78.41
NECEvent2014_8_3_scaffold_847 178_003_scaffold_847
Species: Clostridium perfringens (83.33%)
12 9547 bp 24.75 29.54 78.84
NECEvent2014_8_3_scaffold_1443 178_003_scaffold_1443
Species: Clostridium perfringens (60%)
5 5224 bp 28.04 28.11 67.13
NECEvent2014_8_3_scaffold_1464 178_003_scaffold_1464
Species: Clostridium perfringens (83.33%)
6 5151 bp 26.38 27.72 73.81
NECEvent2014_8_3_scaffold_1539 178_003_scaffold_1539
Species: Clostridium perfringens (100%)
5 4844 bp 27.06 27.68 61.50
NECEvent2014_8_3_scaffold_1557 178_003_scaffold_1557
Species: Clostridium perfringens (80%)
5 4793 bp 26.35 26.63 79.51
NECEvent2014_8_3_scaffold_623 178_003_scaffold_623
Species: Clostridium perfringens (100%)
12 12984 bp 31.02 26.56 87.82
NECEvent2014_8_3_scaffold_840 178_003_scaffold_840
Species: Clostridium perfringens (100%)
8 9654 bp 31.05 26.54 79.86
NECEvent2014_8_3_scaffold_4385 178_003_scaffold_4385
Species: Clostridium perfringens (100%)
3 1204 bp 25.58 26.16 76.50
NECEvent2014_8_3_scaffold_836 178_003_scaffold_836
Species: Clostridium perfringens (76.92%)
13 9672 bp 29.34 26.12 88.04
NECEvent2014_8_3_scaffold_216 178_003_scaffold_216
Species: Clostridium perfringens (93.55%)
31 27399 bp 28.07 26.11 81.92
NECEvent2014_8_3_scaffold_78 178_003_scaffold_78
Species: Clostridium perfringens (100%)
48 45826 bp 29.25 25.66 85.86
NECEvent2014_8_3_scaffold_312 178_003_scaffold_312
Species: Clostridium perfringens (83.33%)
18 22253 bp 29.07 25.53 84.86
NECEvent2014_8_3_scaffold_3295 178_003_scaffold_3295
Species: Clostridium perfringens (100%)
2 1778 bp 26.55 25.39 63.10
NECEvent2014_8_3_scaffold_1625 178_003_scaffold_1625
Species: Clostridium perfringens (100%)
7 4519 bp 22.62 25.19 70.97
NECEvent2014_8_3_scaffold_345 178_003_scaffold_345
Species: Clostridium perfringens (65%)
20 21033 bp 27.21 24.63 85.12
NECEvent2014_8_3_scaffold_1681 178_003_scaffold_1681
Species: Clostridium perfringens (100%)
4 4330 bp 26.97 24.60 74.76
NECEvent2014_8_3_scaffold_504 178_003_scaffold_504
Species: Clostridium perfringens (93.75%)
16 16039 bp 27.93 24.56 84.40
NECEvent2014_8_3_scaffold_310 178_003_scaffold_310
Species: Clostridium perfringens (100%)
20 22465 bp 28.71 24.56 87.98
NECEvent2014_8_3_scaffold_1429 178_003_scaffold_1429
Species: Clostridium perfringens (100%)
4 5286 bp 29.64 24.40 83.03
NECEvent2014_8_3_scaffold_24 178_003_scaffold_24
Species: Clostridium perfringens (100%)
75 69915 bp 30.32 24.38 87.52
NECEvent2014_8_3_scaffold_1741 178_003_scaffold_1741
Species: Clostridium perfringens (100%)
2 4139 bp 31.60 24.28 85.96
NECEvent2014_8_3_scaffold_138 178_003_scaffold_138
Species: Clostridium perfringens (90%)
40 34528 bp 28.55 24.25 83.85
NECEvent2014_8_3_scaffold_1214 178_003_scaffold_1214
Species: Clostridium perfringens (100%)
5 6449 bp 28.52 24.00 87.08
NECEvent2014_8_3_scaffold_244 178_003_scaffold_244
Species: Clostridium perfringens (68.97%)
29 25480 bp 28.45 23.90 78.32
NECEvent2014_8_3_scaffold_255 178_003_scaffold_255
Species: Clostridium perfringens (92%)
25 24974 bp 29.07 23.89 88.36
NECEvent2014_8_3_scaffold_1352 178_003_scaffold_1352
Species: Clostridium perfringens (88.89%)
9 5667 bp 27.16 23.77 79.20
NECEvent2014_8_3_scaffold_3412 178_003_scaffold_3412
Species: Clostridium baratii (100%)
2 1698 bp 34.69 23.76 99.82
NECEvent2014_8_3_scaffold_25 178_003_scaffold_25
Species: Clostridium perfringens (100%)
59 69588 bp 29.57 23.58 85.72
NECEvent2014_8_3_scaffold_358 178_003_scaffold_358
Species: Clostridium perfringens (100%)
17 20557 bp 29.17 23.15 85.43
NECEvent2014_8_3_scaffold_2344 178_003_scaffold_2344
Species: Clostridium perfringens (100%)
2 2792 bp 29.94 23.10 88.65
NECEvent2014_8_3_scaffold_104 178_003_scaffold_104
Species: Clostridium perfringens (89.47%)
38 38293 bp 28.95 23.10 87.38
NECEvent2014_8_3_scaffold_31 178_003_scaffold_31
Species: Clostridium perfringens (86.76%)
68 63997 bp 29.18 22.87 88.91
NECEvent2014_8_3_scaffold_394 178_003_scaffold_394
Species: Clostridium perfringens (100%)
18 18935 bp 28.72 22.62 86.05
NECEvent2014_8_3_scaffold_542 178_003_scaffold_542
Species: Clostridium perfringens (100%)
11 14890 bp 29.14 22.46 80.55
NECEvent2014_8_3_scaffold_2053 178_003_scaffold_2053
Species: Clostridium perfringens (80%)
5 3332 bp 28.69 22.33 84.00
NECEvent2014_8_3_scaffold_1584 178_003_scaffold_1584
Species: Clostridium perfringens (75%)
4 4659 bp 27.60 22.28 55.83
Displaying items 1-50 of 278 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.