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NECEvent2014_8_4_Clostridium_paraputrificum_31_73

NECEvent2014_8_4_Clostridium_30_41
In projects: NECEvent2014_8_4

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

ID based on rpS3

Displaying items 51-100 of 115 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_224 178_004_scaffold_224
Genus: Clostridium (95.45%)
22 20700 bp 29.80 42.49 83.86
NECEvent2014_8_4_scaffold_247 178_004_scaffold_247
Genus: Clostridium (81.82%)
22 19698 bp 28.49 36.48 82.31
NECEvent2014_8_4_scaffold_210 178_004_scaffold_210
Phylum: Firmicutes (61.9%)
21 21680 bp 27.78 32.61 86.57
NECEvent2014_8_4_scaffold_238 178_004_scaffold_238
Genus: Clostridium (60%)
20 19931 bp 28.48 33.51 90.28
NECEvent2014_8_4_scaffold_248 178_004_scaffold_248
Genus: Clostridium (65%)
20 19669 bp 28.78 30.99 86.74
NECEvent2014_8_4_scaffold_319 178_004_scaffold_319
Genus: Clostridium (89.47%)
19 17003 bp 28.72 34.37 88.66
NECEvent2014_8_4_scaffold_192 178_004_scaffold_192
Genus: Clostridium (73.68%)
19 22979 bp 30.68 50.14 90.24
NECEvent2014_8_4_scaffold_205 178_004_scaffold_205
Genus: Clostridium (78.95%)
19 21984 bp 29.35 36.45 91.83
NECEvent2014_8_4_scaffold_340 178_004_scaffold_340
Genus: Clostridium (77.78%)
18 16173 bp 29.32 34.75 88.76
NECEvent2014_8_4_scaffold_275 178_004_scaffold_275
Genus: Clostridium (72.22%)
18 18621 bp 30.88 55.83 87.66
NECEvent2014_8_4_scaffold_303 178_004_scaffold_303
Genus: Clostridium (66.67%)
18 17535 bp 27.61 29.47 85.01
NECEvent2014_8_4_scaffold_382 178_004_scaffold_382
Order: Clostridiales (82.35%)
17 14755 bp 28.76 31.09 82.79
NECEvent2014_8_4_scaffold_375 178_004_scaffold_375
Genus: Clostridium (56.25%)
16 14906 bp 28.73 31.73 85.35
NECEvent2014_8_4_scaffold_400 178_004_scaffold_400
Genus: Clostridium (93.75%)
16 14239 bp 28.33 33.60 81.35
NECEvent2014_8_4_scaffold_280 178_004_scaffold_280
Genus: Clostridium (62.5%)
16 18316 bp 27.01 25.09 88.30
NECEvent2014_8_4_scaffold_312 178_004_scaffold_312
Genus: Clostridium (60%)
15 17174 bp 29.23 39.00 84.41
NECEvent2014_8_4_scaffold_327 178_004_scaffold_327
Genus: Clostridium (53.33%)
15 16744 bp 26.62 28.99 90.41
NECEvent2014_8_4_scaffold_372 178_004_scaffold_372
Phylum: Firmicutes (80%)
15 14928 bp 30.18 39.52 89.57
NECEvent2014_8_4_scaffold_373 178_004_scaffold_373
Genus: Clostridium (66.67%)
15 14914 bp 28.89 30.43 89.07
NECEvent2014_8_4_scaffold_413 178_004_scaffold_413
Genus: Clostridium (60%)
15 13946 bp 29.11 32.24 85.94
NECEvent2014_8_4_scaffold_414 178_004_scaffold_414
Genus: Clostridium (66.67%)
15 13945 bp 29.04 30.73 85.39
NECEvent2014_8_4_scaffold_348 178_004_scaffold_348
Genus: Clostridium (71.43%)
14 15696 bp 28.43 39.22 87.98
NECEvent2014_8_4_scaffold_363 178_004_scaffold_363
Genus: Clostridium (85.71%)
14 15158 bp 28.46 27.61 93.77
NECEvent2014_8_4_scaffold_264 178_004_scaffold_264
Order: Clostridiales (57.14%)
14 19128 bp 30.37 44.62 91.14
NECEvent2014_8_4_scaffold_543 178_004_scaffold_543
Species: Clostridium sulfidigenes (50%)
14 11200 bp 27.08 28.92 80.06
NECEvent2014_8_4_scaffold_379 178_004_scaffold_379
Genus: Clostridium (92.31%)
13 14769 bp 34.46 96.84 88.95
NECEvent2014_8_4_scaffold_387 178_004_scaffold_387
Genus: Clostridium (69.23%)
13 14570 bp 28.60 32.00 90.25
NECEvent2014_8_4_scaffold_441 178_004_scaffold_441
Genus: Clostridium (69.23%)
13 13139 bp 29.10 40.37 95.69
NECEvent2014_8_4_scaffold_627 178_004_scaffold_627
Genus: Clostridium (83.33%)
12 9966 bp 29.74 37.25 89.67
NECEvent2014_8_4_scaffold_497 178_004_scaffold_497
Genus: Clostridium (58.33%)
12 12062 bp 28.80 30.94 89.46
NECEvent2014_8_4_scaffold_339 178_004_scaffold_339
Genus: Clostridium (63.64%)
11 16185 bp 29.68 35.76 90.27
NECEvent2014_8_4_scaffold_611 178_004_scaffold_611
Genus: Clostridium (81.82%)
11 10199 bp 30.70 48.39 86.36
NECEvent2014_8_4_scaffold_969 178_004_scaffold_969
Order: Clostridiales (63.64%)
11 6724 bp 27.14 26.88 77.50
NECEvent2014_8_4_scaffold_529 178_004_scaffold_529
Genus: Clostridium (90.91%)
11 11558 bp 29.72 44.37 88.02
NECEvent2014_8_4_scaffold_423 178_004_scaffold_423
Genus: Clostridium (60%)
10 13704 bp 28.47 26.75 89.36
NECEvent2014_8_4_scaffold_645 178_004_scaffold_645
Species: Clostridium baratii (55.56%)
9 9706 bp 30.36 43.94 93.87
NECEvent2014_8_4_scaffold_914 178_004_scaffold_914
Genus: Clostridium (77.78%)
9 12251 bp 28.90 33.81 89.75
NECEvent2014_8_4_scaffold_928 178_004_scaffold_928
Phylum: Firmicutes (88.89%)
9 6987 bp 27.06 26.77 76.43
NECEvent2014_8_4_scaffold_424 178_004_scaffold_424
Order: Clostridiales (100%)
9 13669 bp 27.59 35.99 91.21
NECEvent2014_8_4_scaffold_718 178_004_scaffold_718
Order: Clostridiales (55.56%)
9 8925 bp 29.08 31.01 75.66
NECEvent2014_8_4_scaffold_1016 178_004_scaffold_1016
Genus: Clostridium (100%)
9 6414 bp 26.61 27.43 82.46
NECEvent2014_8_4_scaffold_600 178_004_scaffold_600
Order: Clostridiales (62.5%)
8 10365 bp 29.84 39.29 85.93
NECEvent2014_8_4_scaffold_418 178_004_scaffold_418
Genus: Clostridium (62.5%)
8 13890 bp 30.97 57.51 86.09
NECEvent2014_8_4_scaffold_753 178_004_scaffold_753
Genus: Clostridium (62.5%)
8 8612 bp 29.05 32.83 92.10
NECEvent2014_8_4_scaffold_949 178_004_scaffold_949
Order: Clostridiales (71.43%)
7 6854 bp 27.82 33.29 73.23
NECEvent2014_8_4_scaffold_797 178_004_scaffold_797
Phylum: Firmicutes (85.71%)
7 8198 bp 30.01 30.98 89.88
NECEvent2014_8_4_scaffold_1082 178_004_scaffold_1082
Genus: Clostridium (83.33%)
6 5921 bp 29.64 35.19 88.11
NECEvent2014_8_4_scaffold_850 178_004_scaffold_850
Order: Clostridiales (66.67%)
6 7640 bp 28.55 41.39 87.60
NECEvent2014_8_4_scaffold_876 178_004_scaffold_876
Genus: Clostridium (100%)
6 7362 bp 29.99 48.63 77.22
NECEvent2014_8_4_scaffold_3037 178_004_scaffold_3037
Species: Clostridium perfringens (66.67%)
6 3132 bp 33.40 25.05 87.48
Displaying items 51-100 of 115 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.