ggKbase home page

NECEvent2014_8_4_Clostridium_paraputrificum_31_73

NECEvent2014_8_4_Clostridium_30_41
In projects: NECEvent2014_8_4

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

ID based on rpS3

Displaying items 1-50 of 115 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_4_scaffold_379 178_004_scaffold_379
Genus: Clostridium (92.31%)
13 14769 bp 34.46 96.84 88.95
NECEvent2014_8_4_scaffold_834 178_004_scaffold_834
Species: Clostridium butyricum (50%)
4 7811 bp 32.04 85.09 78.12
NECEvent2014_8_4_scaffold_5399 178_004_scaffold_5399
Species: Clostridium sp. IBUN13A (100%)
1 1072 bp 29.66 83.12 90.95
NECEvent2014_8_4_scaffold_2834 178_004_scaffold_2834
Genus: Clostridium (100%)
3 2892 bp 31.26 73.91 86.00
NECEvent2014_8_4_scaffold_4124 178_004_scaffold_4124
Species: Clostridium botulinum (100%)
1 1479 bp 30.49 66.73 89.86
NECEvent2014_8_4_scaffold_26 178_004_scaffold_26
Genus: Clostridium (93.59%)
78 67701 bp 31.75 62.16 89.37
NECEvent2014_8_4_scaffold_31 178_004_scaffold_31
Genus: Clostridium (53%)
57 62975 bp 32.73 58.26 88.88
NECEvent2014_8_4_scaffold_418 178_004_scaffold_418
Genus: Clostridium (62.5%)
8 13890 bp 30.97 57.51 86.09
NECEvent2014_8_4_scaffold_1072 178_004_scaffold_1072
Genus: Clostridium (100%)
4 5963 bp 30.67 57.38 89.55
NECEvent2014_8_4_scaffold_275 178_004_scaffold_275
Genus: Clostridium (72.22%)
18 18621 bp 30.88 55.83 87.66
NECEvent2014_8_4_scaffold_233 178_004_scaffold_233
Genus: Clostridium (91.67%)
24 20131 bp 31.99 51.75 88.46
NECEvent2014_8_4_scaffold_2018 178_004_scaffold_2018
Genus: Clostridium (100%)
3 3213 bp 29.69 50.65 89.64
NECEvent2014_8_4_scaffold_192 178_004_scaffold_192
Genus: Clostridium (73.68%)
19 22979 bp 30.68 50.14 90.24
NECEvent2014_8_4_scaffold_20 178_004_scaffold_20
Genus: Clostridium (91.89%)
74 80878 bp 30.49 49.61 89.77
NECEvent2014_8_4_scaffold_92 178_004_scaffold_92
Genus: Clostridium (90.63%)
32 35440 bp 30.61 48.99 89.30
NECEvent2014_8_4_scaffold_876 178_004_scaffold_876
Genus: Clostridium (100%)
6 7362 bp 29.99 48.63 77.22
NECEvent2014_8_4_scaffold_611 178_004_scaffold_611
Genus: Clostridium (81.82%)
11 10199 bp 30.70 48.39 86.36
NECEvent2014_8_4_scaffold_99 178_004_scaffold_99
Genus: Clostridium (88.89%)
45 33992 bp 29.98 47.67 89.02
NECEvent2014_8_4_scaffold_189 178_004_scaffold_189
Genus: Clostridium (84%)
25 23326 bp 30.46 46.87 89.06
NECEvent2014_8_4_scaffold_13 178_004_scaffold_13
Genus: Clostridium (73.75%)
80 99748 bp 30.64 46.33 91.27
NECEvent2014_8_4_scaffold_2 178_004_scaffold_2
Genus: Clostridium (88.14%)
118 127368 bp 30.61 46.06 90.07
NECEvent2014_8_4_scaffold_17 178_004_scaffold_17
Genus: Clostridium (96.67%)
90 89967 bp 30.23 46.04 92.83
NECEvent2014_8_4_scaffold_921 178_004_scaffold_921
Species: Clostridium botulinum (50%)
4 7022 bp 31.06 45.59 91.26
NECEvent2014_8_4_scaffold_0 178_004_scaffold_0
Genus: Clostridium (87.83%)
115 131516 bp 29.84 45.14 89.97
NECEvent2014_8_4_scaffold_879 178_004_scaffold_879
Genus: Clostridium (100%)
5 7359 bp 30.22 44.62 90.95
NECEvent2014_8_4_scaffold_264 178_004_scaffold_264
Order: Clostridiales (57.14%)
14 19128 bp 30.37 44.62 91.14
NECEvent2014_8_4_scaffold_1641 178_004_scaffold_1641
Genus: Clostridium (60%)
5 3884 bp 30.69 44.45 68.33
NECEvent2014_8_4_scaffold_529 178_004_scaffold_529
Genus: Clostridium (90.91%)
11 11558 bp 29.72 44.37 88.02
NECEvent2014_8_4_scaffold_23 178_004_scaffold_23
Genus: Clostridium (89.33%)
75 70342 bp 30.12 44.20 90.88
NECEvent2014_8_4_scaffold_76 178_004_scaffold_76
Genus: Clostridium (90.24%)
41 38455 bp 30.42 44.11 91.35
NECEvent2014_8_4_scaffold_645 178_004_scaffold_645
Species: Clostridium baratii (55.56%)
9 9706 bp 30.36 43.94 93.87
NECEvent2014_8_4_scaffold_33 178_004_scaffold_33
Genus: Clostridium (83.33%)
54 60270 bp 30.10 43.70 90.14
NECEvent2014_8_4_scaffold_170 178_004_scaffold_170
Genus: Clostridium (92.86%)
28 24563 bp 29.42 43.11 92.41
NECEvent2014_8_4_scaffold_7 178_004_scaffold_7
Genus: Clostridium (75.68%)
111 112762 bp 29.90 42.95 89.25
NECEvent2014_8_4_scaffold_21 178_004_scaffold_21
Genus: Clostridium (86.25%)
80 77998 bp 30.08 42.74 91.08
NECEvent2014_8_4_scaffold_224 178_004_scaffold_224
Genus: Clostridium (95.45%)
22 20700 bp 29.80 42.49 83.86
NECEvent2014_8_4_scaffold_5 178_004_scaffold_5
Genus: Clostridium (86.92%)
107 115668 bp 29.81 42.41 88.79
NECEvent2014_8_4_scaffold_48 178_004_scaffold_48
Genus: Clostridium (86.67%)
45 52731 bp 30.10 42.29 89.58
NECEvent2014_8_4_scaffold_1 178_004_scaffold_1
Genus: Clostridium (95.35%)
129 130300 bp 30.14 41.60 91.56
NECEvent2014_8_4_scaffold_140 178_004_scaffold_140
Genus: Clostridium (86.11%)
36 28349 bp 29.99 41.47 89.18
NECEvent2014_8_4_scaffold_850 178_004_scaffold_850
Order: Clostridiales (66.67%)
6 7640 bp 28.55 41.39 87.60
NECEvent2014_8_4_scaffold_191 178_004_scaffold_191
Genus: Clostridium (61.54%)
26 23172 bp 29.93 41.36 90.45
NECEvent2014_8_4_scaffold_441 178_004_scaffold_441
Genus: Clostridium (69.23%)
13 13139 bp 29.10 40.37 95.69
NECEvent2014_8_4_scaffold_152 178_004_scaffold_152
Genus: Clostridium (66.67%)
24 26397 bp 29.77 40.10 87.60
NECEvent2014_8_4_scaffold_11 178_004_scaffold_11
Genus: Clostridium (58.95%)
95 101199 bp 29.66 40.09 87.28
NECEvent2014_8_4_scaffold_143 178_004_scaffold_143
Genus: Clostridium (88.57%)
35 27832 bp 30.26 39.95 92.34
NECEvent2014_8_4_scaffold_180 178_004_scaffold_180
Genus: Clostridium (55.17%)
29 23926 bp 29.75 39.67 86.57
NECEvent2014_8_4_scaffold_372 178_004_scaffold_372
Phylum: Firmicutes (80%)
15 14928 bp 30.18 39.52 89.57
NECEvent2014_8_4_scaffold_600 178_004_scaffold_600
Order: Clostridiales (62.5%)
8 10365 bp 29.84 39.29 85.93
NECEvent2014_8_4_scaffold_348 178_004_scaffold_348
Genus: Clostridium (71.43%)
14 15696 bp 28.43 39.22 87.98
Displaying items 1-50 of 115 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.