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PLM4_65_b1_sep16_Alphaproteobacteria_Rhodospirillales_68_15

PLM4_65cm_b1_redo_sep2016_Alphaproteobacteria_68_15
In projects: PLM4_65cm_b1_redo_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 472 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_65_b1_redo_sep16_scaffold_1708
Phylum: Proteobacteria (69.57%)
23 24522 bp 68.14 15.81 91.38
PLM4_65_b1_redo_sep16_scaffold_5897
Phylum: Proteobacteria (64.71%)
17 19349 bp 67.35 15.81 87.71
PLM4_65_b1_redo_sep16_scaffold_3463
Class: Alphaproteobacteria (68.75%)
16 17022 bp 68.95 15.83 90.68
PLM4_65_b1_redo_sep16_scaffold_84773
Domain: Bacteria (60%)
5 2983 bp 69.59 15.84 92.62
PLM4_65_b1_redo_sep16_scaffold_112405
Domain: Bacteria (50%)
4 2801 bp 69.55 15.85 96.50
PLM4_65_b1_redo_sep16_scaffold_36288
Order: Rhodospirillales (60%)
5 4883 bp 68.32 15.85 85.46
PLM4_65_b1_redo_sep16_scaffold_94513
Class: Betaproteobacteria (100%)
7 4055 bp 65.10 15.87 96.92
PLM4_65_b1_redo_sep16_scaffold_53128
Order: Rhodospirillales (66.67%)
3 3923 bp 71.63 15.87 96.28
PLM4_65_b1_redo_sep16_scaffold_42391
Phylum: Proteobacteria (75%)
4 4472 bp 67.64 15.87 94.19
PLM4_65_b1_redo_sep16_scaffold_70721
Class: Alphaproteobacteria (62.5%)
8 3524 bp 67.91 15.88 85.98
PLM4_65_b1_redo_sep16_scaffold_6335
Class: Alphaproteobacteria (50%)
12 12418 bp 66.98 15.88 88.23
PLM4_65_b1_redo_sep16_scaffold_4226
Order: Rhodospirillales (66.67%)
15 15320 bp 69.96 15.88 90.41
PLM4_65_b1_redo_sep16_scaffold_2549
Phylum: Proteobacteria (78.95%)
19 19844 bp 68.07 15.90 93.20
PLM4_65_b1_redo_sep16_scaffold_3778
Phylum: Proteobacteria (87.5%)
16 16214 bp 68.77 15.90 96.77
PLM4_65_b1_redo_sep16_scaffold_52776
Domain: Bacteria (60%)
5 3941 bp 67.95 15.91 89.22
PLM4_65_b1_redo_sep16_scaffold_4708
Class: Alphaproteobacteria (67.86%)
28 24334 bp 68.25 15.91 83.25
PLM4_65_b1_redo_sep16_scaffold_40067
Class: Betaproteobacteria (83.33%)
6 8209 bp 69.95 15.92 91.03
PLM4_65_b1_redo_sep16_scaffold_4037
Class: Alphaproteobacteria (66.67%)
15 15688 bp 67.93 15.92 93.43
PLM4_65_b1_redo_sep16_scaffold_10318
Class: Alphaproteobacteria (66.67%)
9 9684 bp 68.89 15.92 82.93
PLM4_65_b1_redo_sep16_scaffold_886
Order: Rhodospirillales (50%)
32 32571 bp 67.39 15.92 85.70
PLM4_65_b1_redo_sep16_scaffold_17243
Class: Alphaproteobacteria (70%)
10 7722 bp 68.23 15.93 82.87
PLM4_65_b1_redo_sep16_scaffold_817
Order: Rhodospirillales (71.88%)
32 33758 bp 69.10 15.93 91.39
PLM4_65_b1_redo_sep16_scaffold_38491
Species: Sphingomonas wittichii (55.56%)
9 8108 bp 68.08 15.95 97.98
PLM4_65_b1_redo_sep16_scaffold_1044
Order: Rhodospirillales (60.71%)
28 30315 bp 68.79 15.95 90.84
PLM4_65_b1_redo_sep16_scaffold_1819
Class: Alphaproteobacteria (54.55%)
22 23922 bp 67.98 15.97 85.05
PLM4_65_b1_redo_sep16_scaffold_1250
Class: Alphaproteobacteria (62.5%)
32 28025 bp 68.27 15.98 84.55
PLM4_65_b1_redo_sep16_scaffold_76555
Order: Rhodospirillales (75%)
4 3170 bp 66.34 15.99 85.74
PLM4_65_b1_redo_sep16_scaffold_973
Phylum: Proteobacteria (65.63%)
32 31398 bp 67.07 15.99 86.86
PLM4_65_b1_redo_sep16_scaffold_24790
Domain: Bacteria (77.78%)
9 6941 bp 67.09 15.99 92.28
PLM4_65_b1_redo_sep16_scaffold_2944
Phylum: Proteobacteria (70.59%)
17 19333 bp 68.66 15.99 93.39
PLM4_65_b1_redo_sep16_scaffold_6779
Phylum: Proteobacteria (60%)
10 12012 bp 67.10 16.01 87.94
PLM4_65_b1_redo_sep16_scaffold_1007
Phylum: Proteobacteria (77.42%)
31 30813 bp 66.92 16.03 90.85
PLM4_65_b1_redo_sep16_scaffold_8798
Phylum: Proteobacteria (62.5%)
8 10505 bp 68.68 16.06 92.07
PLM4_65_b1_redo_sep16_scaffold_177058
Class: Betaproteobacteria (50%)
4 2868 bp 67.71 16.06 90.80
PLM4_65_b1_redo_sep16_scaffold_5982
Class: Alphaproteobacteria (53.33%)
15 15865 bp 66.76 16.06 87.59
PLM4_65_b1_redo_sep16_scaffold_31857
Phylum: Proteobacteria (85.71%)
7 5245 bp 68.35 16.07 91.92
PLM4_65_b1_redo_sep16_scaffold_1513
Order: Rhodospirillales (60%)
25 25532 bp 68.45 16.09 94.12
PLM4_65_b1_redo_sep16_scaffold_9879
Class: Betaproteobacteria (50%)
12 9892 bp 66.84 16.10 95.50
PLM4_65_b1_redo_sep16_scaffold_2112
Phylum: Proteobacteria (60.87%)
23 24404 bp 68.07 16.13 92.55
PLM4_65_b1_redo_sep16_scaffold_1067
Phylum: Proteobacteria (66.67%)
57 56167 bp 67.08 16.13 82.61
PLM4_65_b1_redo_sep16_scaffold_1133
Phylum: Proteobacteria (85.29%)
34 29285 bp 66.76 16.14 92.99
PLM4_65_b1_redo_sep16_scaffold_858
Class: Alphaproteobacteria (55.88%)
34 33062 bp 67.10 16.14 89.97
PLM4_65_b1_redo_sep16_scaffold_885
Order: Rhodospirillales (57.69%)
26 32572 bp 68.60 16.14 93.23
PLM4_65_b1_redo_sep16_scaffold_4572
Order: Rhodospirillales (62.5%)
16 14758 bp 68.30 16.15 89.79
PLM4_65_b1_redo_sep16_scaffold_1340
Class: Alphaproteobacteria (62.07%)
29 27262 bp 68.70 16.15 90.91
PLM4_65_b1_redo_sep16_scaffold_17190
Phylum: Proteobacteria (62.5%)
8 7352 bp 68.76 16.18 85.77
PLM4_65_b1_redo_sep16_scaffold_47466
Species: Bradyrhizobium sp. DFCI-1 (50%)
2 4189 bp 69.59 16.19 95.39
PLM4_65_b1_redo_sep16_scaffold_19599
Class: Alphaproteobacteria (66.67%)
12 9431 bp 68.01 16.21 89.99
PLM4_65_b1_redo_sep16_scaffold_17442
Phylum: Proteobacteria (75%)
8 7301 bp 67.14 16.23 94.88
PLM4_65_b1_redo_sep16_scaffold_3544
Phylum: Proteobacteria (76.47%)
17 16806 bp 66.77 16.24 93.07
Displaying items 351-400 of 472 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.