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PLM3_30_b1_sep16_Alphaproteobacteria_Rhizobiales_66_8

PLM3_30cm_b1_sep2016_Rhizobiales_66_8
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 743 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_2338
Order: Rhizobiales (81.82%)
11 9611 bp 65.41 12.17 90.37
PLM3_30_b1_sep16_scaffold_1811
Order: Rhizobiales (80.95%)
21 16367 bp 64.23 7.55 90.36
PLM3_30_b1_sep16_scaffold_9430
Species: Rhodovulum sp. PH10 (50%)
4 4874 bp 67.19 8.86 90.36
PLM3_30_b1_sep16_scaffold_26076
Genus: Bradyrhizobium (75%)
4 4616 bp 66.94 8.87 90.34
PLM3_30_b1_sep16_scaffold_8863
Class: Alphaproteobacteria (50%)
6 6881 bp 64.87 8.94 90.34
PLM3_30_b1_sep16_scaffold_37679
Species: Rhodovulum sp. PH10 (100%)
4 3414 bp 66.73 7.73 90.33
PLM3_30_b1_sep16_scaffold_49540
Order: Rhizobiales (50%)
6 4507 bp 65.05 9.52 90.33
PLM3_30_b1_sep16_scaffold_3000
Class: Alphaproteobacteria (50%)
10 8589 bp 64.37 8.09 90.31
PLM3_30_b1_sep16_scaffold_57616
Order: Rhizobiales (75%)
4 3023 bp 64.77 8.39 90.31
PLM3_30_b1_sep16_scaffold_29593
Order: Rhizobiales (60%)
5 3487 bp 66.25 7.61 90.25
PLM3_30_b1_sep16_scaffold_11185
Order: Rhizobiales (60%)
15 13556 bp 64.72 9.34 90.25
PLM3_30_b1_sep16_scaffold_17752
Domain: Bacteria (100%)
5 3438 bp 65.10 6.28 90.23
PLM3_30_b1_sep16_scaffold_20586
Order: Rhizobiales (60%)
10 8509 bp 65.54 8.29 90.22
PLM3_30_b1_sep16_scaffold_27083
Order: Rhizobiales (60%)
5 5760 bp 66.58 7.08 90.21
PLM3_30_b1_sep16_scaffold_6630
Order: Rhizobiales (57.14%)
7 5840 bp 66.52 8.63 90.21
PLM3_30_b1_sep16_scaffold_10626
Order: Rhizobiales (50%)
6 4564 bp 64.77 9.63 90.18
PLM3_30_b1_sep16_scaffold_22989
Order: Rhizobiales (50%)
4 2974 bp 65.53 7.97 90.18
PLM3_30_b1_sep16_scaffold_5440
Order: Rhizobiales (66.67%)
18 14278 bp 66.58 7.80 90.16
PLM3_30_b1_sep16_scaffold_10934
Order: Rhizobiales (91.67%)
12 12638 bp 65.14 8.91 90.16
PLM3_30_b1_sep16_scaffold_15512
Species: Bradyrhizobium oligotrophicum (50%)
2 3707 bp 66.20 7.85 90.15
PLM3_30_b1_sep16_scaffold_5370
Class: Alphaproteobacteria (62.5%)
16 9969 bp 64.14 8.47 90.13
PLM3_30_b1_sep16_scaffold_5549
Order: Rhizobiales (80%)
10 6856 bp 66.06 8.40 90.10
PLM3_30_b1_sep16_scaffold_10033
Order: Rhizobiales (66.67%)
12 11013 bp 65.75 8.02 90.08
PLM3_30_b1_sep16_scaffold_5721
Genus: Bradyrhizobium (50%)
12 9116 bp 65.03 8.23 90.07
PLM3_30_b1_sep16_scaffold_5145
Class: Alphaproteobacteria (55.56%)
9 8631 bp 66.15 8.32 90.06
PLM3_30_b1_sep16_scaffold_3771
Order: Rhizobiales (66.67%)
12 8156 bp 64.93 7.63 90.01
PLM3_30_b1_sep16_scaffold_28253
Species: Rhodopseudomonas palustris (50%)
2 2657 bp 65.22 6.38 89.99
PLM3_30_b1_sep16_scaffold_51800
Species: Rhodopseudomonas palustris (50%)
4 2814 bp 64.14 8.16 89.98
PLM3_30_b1_sep16_scaffold_21500
Order: Rhizobiales (50%)
4 4159 bp 64.44 8.22 89.95
PLM3_30_b1_sep16_scaffold_2876
Order: Rhizobiales (83.33%)
12 11923 bp 67.09 8.58 89.90
PLM3_30_b1_sep16_scaffold_1898
Order: Rhizobiales (52.94%)
17 16610 bp 66.93 8.52 89.89
PLM3_30_b1_sep16_scaffold_12690
Order: Rhizobiales (66.67%)
6 6516 bp 67.27 7.80 89.87
PLM3_30_b1_sep16_scaffold_21948
Class: Alphaproteobacteria (88.89%)
9 8191 bp 66.39 7.64 89.84
PLM3_30_b1_sep16_scaffold_47001
Order: Rhizobiales (50%)
4 3363 bp 68.09 5.84 89.83
PLM3_30_b1_sep16_scaffold_14303
Species: Rhodovulum sp. PH10 (80%)
5 5093 bp 68.27 8.39 89.83
PLM3_30_b1_sep16_scaffold_12512
Phylum: Proteobacteria (60%)
5 4178 bp 63.45 9.48 89.83
PLM3_30_b1_sep16_scaffold_2372
Order: Rhizobiales (60%)
10 10577 bp 65.36 9.01 89.80
PLM3_30_b1_sep16_scaffold_14274
Order: Rhizobiales (83.33%)
6 4587 bp 66.97 7.23 89.80
PLM3_30_b1_sep16_scaffold_21671
Phylum: Proteobacteria (66.67%)
3 3074 bp 63.11 14.10 89.79
PLM3_30_b1_sep16_scaffold_30325
Domain: Bacteria (100%)
3 2554 bp 65.86 8.22 89.74
PLM3_30_b1_sep16_scaffold_12982
Class: Alphaproteobacteria (61.54%)
13 9799 bp 66.71 8.63 89.73
PLM3_30_b1_sep16_scaffold_23917
Order: Rhizobiales (66.67%)
3 2912 bp 64.90 7.31 89.73
PLM3_30_b1_sep16_scaffold_4928
Order: Rhizobiales (70%)
10 8551 bp 64.96 7.53 89.71
PLM3_30_b1_sep16_scaffold_27170
Order: Rhizobiales (57.14%)
7 4863 bp 64.90 9.25 89.70
PLM3_30_b1_sep16_scaffold_2251
Order: Rhizobiales (64.71%)
17 15758 bp 65.19 8.11 89.69
PLM3_30_b1_sep16_scaffold_5403
Order: Rhizobiales (50%)
12 12198 bp 65.42 8.30 89.67
PLM3_30_b1_sep16_scaffold_4169
Phylum: Proteobacteria (61.54%)
13 11212 bp 66.62 9.43 89.64
PLM3_30_b1_sep16_scaffold_3065
Class: Alphaproteobacteria (52.38%)
21 15788 bp 65.96 8.37 89.63
PLM3_30_b1_sep16_scaffold_4292
Class: Alphaproteobacteria (60%)
10 12064 bp 65.99 8.34 89.62
PLM3_30_b1_sep16_scaffold_23671
Species: Rhodovulum sp. PH10 (50%)
4 2929 bp 67.43 8.09 89.62
Displaying items 351-400 of 743 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.