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PLM3_30_b1_sep16_Alphaproteobacteria_Rhizobiales_66_8

PLM3_30cm_b1_sep2016_Rhizobiales_66_8
In projects: PLM3_30cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 743 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_30_b1_sep16_scaffold_3843
Order: Rhizobiales (66.67%)
15 14611 bp 65.96 8.17 91.23
PLM3_30_b1_sep16_scaffold_15831
Order: Rhizobiales (50%)
6 4542 bp 62.44 9.15 91.22
PLM3_30_b1_sep16_scaffold_11360
Class: Alphaproteobacteria (87.5%)
8 6283 bp 66.27 8.36 91.20
PLM3_30_b1_sep16_scaffold_46760
Genus: Bradyrhizobium (50%)
4 3109 bp 64.91 8.15 91.19
PLM3_30_b1_sep16_scaffold_5189
Order: Rhizobiales (57.14%)
7 8462 bp 65.54 10.41 91.18
PLM3_30_b1_sep16_scaffold_7934
Order: Rhodospirillales (55.56%)
9 7109 bp 65.72 8.74 91.15
PLM3_30_b1_sep16_scaffold_22407
Genus: Nitrobacter (50%)
4 3015 bp 66.37 8.81 91.14
PLM3_30_b1_sep16_scaffold_5603
Order: Rhizobiales (50%)
8 6350 bp 65.56 9.12 91.13
PLM3_30_b1_sep16_scaffold_4962
Order: Rhizobiales (60%)
15 12386 bp 65.21 8.73 91.12
PLM3_30_b1_sep16_scaffold_15703
Species: Rhodovulum sp. PH10 (50%)
6 5673 bp 64.69 8.12 91.12
PLM3_30_b1_sep16_scaffold_56226
Order: Rhizobiales (80%)
5 3428 bp 64.35 8.27 91.10
PLM3_30_b1_sep16_scaffold_10654
Order: Rhizobiales (68.75%)
16 13855 bp 65.67 8.72 91.08
PLM3_30_b1_sep16_scaffold_28908
Species: RIFOXYC2_FULL_Burkholderiales_59_8_curated (50%)
2 2622 bp 67.77 7.67 91.08
PLM3_30_b1_sep16_scaffold_4700
Genus: Bradyrhizobium (50%)
8 6933 bp 68.04 8.24 91.04
PLM3_30_b1_sep16_scaffold_7945
Species: R_Betaproteobacteria_68_150 (50%)
4 5324 bp 67.49 7.89 91.00
PLM3_30_b1_sep16_scaffold_3803
Class: Alphaproteobacteria (66.67%)
9 8784 bp 65.60 7.53 90.98
PLM3_30_b1_sep16_scaffold_24230
Order: Rhizobiales (66.67%)
3 2892 bp 64.21 7.62 90.98
PLM3_30_b1_sep16_scaffold_4249
Order: Rhizobiales (70%)
10 7272 bp 64.80 9.24 90.97
PLM3_30_b1_sep16_scaffold_34802
Order: Rhizobiales (75%)
4 3463 bp 67.95 8.62 90.96
PLM3_30_b1_sep16_scaffold_2506
Order: Rhizobiales (63.64%)
11 9343 bp 66.62 7.83 90.90
PLM3_30_b1_sep16_scaffold_13903
Genus: Bradyrhizobium (50%)
6 6735 bp 66.30 7.75 90.87
PLM3_30_b1_sep16_scaffold_21201
Order: Rhizobiales (66.67%)
9 7660 bp 64.28 8.77 90.86
PLM3_30_b1_sep16_scaffold_18372
Order: Rhizobiales (75%)
4 3368 bp 65.68 9.00 90.86
PLM3_30_b1_sep16_scaffold_11985
Order: Rhizobiales (80%)
5 5964 bp 66.21 7.72 90.85
PLM3_30_b1_sep16_scaffold_17229
Order: Rhizobiales (60%)
5 3494 bp 67.95 7.17 90.84
PLM3_30_b1_sep16_scaffold_6521
Class: Alphaproteobacteria (68.75%)
16 13816 bp 65.58 7.58 90.83
PLM3_30_b1_sep16_scaffold_13386
Order: Rhodospirillales (50%)
4 4023 bp 64.45 7.83 90.83
PLM3_30_b1_sep16_scaffold_17803
Species: Rhodovulum sp. PH10 (66.67%)
3 3432 bp 64.77 9.83 90.82
PLM3_30_b1_sep16_scaffold_49365
Class: Alphaproteobacteria (66.67%)
6 4367 bp 64.78 8.42 90.82
PLM3_30_b1_sep16_scaffold_22918
Order: Rhizobiales (81.82%)
11 9975 bp 66.65 7.70 90.80
PLM3_30_b1_sep16_scaffold_21966
Order: Rhizobiales (50%)
8 7854 bp 64.50 7.94 90.76
PLM3_30_b1_sep16_scaffold_22391
Class: Alphaproteobacteria (60%)
5 3017 bp 66.85 7.66 90.75
PLM3_30_b1_sep16_scaffold_3707
Order: Rhizobiales (70.59%)
17 13818 bp 67.48 8.51 90.66
PLM3_30_b1_sep16_scaffold_3981
Class: Alphaproteobacteria (66.67%)
9 11406 bp 65.82 8.51 90.66
PLM3_30_b1_sep16_scaffold_15741
Genus: Methylobacterium (50%)
4 3673 bp 64.72 9.52 90.66
PLM3_30_b1_sep16_scaffold_4050
Order: Rhizobiales (50%)
10 7427 bp 65.83 7.72 90.64
PLM3_30_b1_sep16_scaffold_4238
Order: Rhizobiales (66.67%)
6 8096 bp 65.71 7.43 90.64
PLM3_30_b1_sep16_scaffold_6301
Phylum: Proteobacteria (71.43%)
7 8984 bp 65.39 8.35 90.63
PLM3_30_b1_sep16_scaffold_9026
Class: Alphaproteobacteria (50%)
6 4986 bp 64.88 7.19 90.61
PLM3_30_b1_sep16_scaffold_9966
Order: Rhizobiales (60%)
10 9886 bp 64.15 8.72 90.61
PLM3_30_b1_sep16_scaffold_10424
Genus: Azospirillum (60%)
5 4610 bp 65.18 7.91 90.59
PLM3_30_b1_sep16_scaffold_10444
Phylum: Proteobacteria (77.78%)
9 4604 bp 62.55 8.89 90.57
PLM3_30_b1_sep16_scaffold_35325
Genus: Rhodovulum (50%)
6 4763 bp 67.60 7.87 90.57
PLM3_30_b1_sep16_scaffold_26939
Order: Rhizobiales (66.67%)
3 2727 bp 67.18 6.22 90.54
PLM3_30_b1_sep16_scaffold_248
Order: Rhizobiales (51.72%)
29 31242 bp 62.87 9.70 90.53
PLM3_30_b1_sep16_scaffold_19090
Class: Alphaproteobacteria (55.56%)
9 6169 bp 64.56 7.83 90.50
PLM3_30_b1_sep16_scaffold_60057
Species: Bradyrhizobium sp. LTSPM299 (66.67%)
3 3140 bp 63.41 4.54 90.48
PLM3_30_b1_sep16_scaffold_8903
Order: Rhizobiales (50%)
8 7173 bp 66.74 7.55 90.46
PLM3_30_b1_sep16_scaffold_33392
Order: Rhizobiales (85.71%)
7 3653 bp 65.84 7.39 90.42
PLM3_30_b1_sep16_scaffold_5048
Class: Alphaproteobacteria (56.25%)
16 15135 bp 67.09 9.04 90.37
Displaying items 301-350 of 743 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.